Analysis of interatomic Contacts of Structural Units in PDB entry:
8XSJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XSJ entry

There are 4 chains in PDB entry 8XSJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 19	ALA 614
B	THR 333	PRO 527
H	GLN 1	GLU 221
L	ASP 1	GLU 213

There are 43 helices in PDB entry 8XSJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	53	Right-handed alpha
Helix 2	AA2	A	55	81	Right-handed alpha
Helix 3	AA3	A	92	102	Right-handed alpha
Helix 4	AA4	A	103	107	Right-handed 310
Helix 5	AA5	A	109	129	Right-handed alpha
Helix 6	AA6	A	147	154	Right-handed alpha
Helix 7	AA7	A	157	172	Right-handed alpha
Helix 8	AA8	A	173	175	Right-handed 310
Helix 9	AA9	A	176	194	Right-handed alpha
Helix 10	AB1	A	198	205	Right-handed alpha
Helix 11	AB2	A	206	208	Right-handed 310
Helix 12	AB3	A	220	232	Right-handed alpha
Helix 13	AB4	A	233	249	Right-handed alpha
Helix 14	AB5	A	275	277	Right-handed 310
Helix 15	AB6	A	278	283	Right-handed alpha
Helix 16	AB7	A	293	300	Right-handed alpha
Helix 17	AB8	A	303	318	Right-handed alpha
Helix 18	AB9	A	326	331	Right-handed alpha
Helix 19	AC1	A	365	385	Right-handed alpha
Helix 20	AC2	A	389	393	Right-handed 310
Helix 21	AC3	A	400	413	Right-handed alpha
Helix 22	AC4	A	414	420	Right-handed alpha
Helix 23	AC5	A	433	447	Right-handed alpha
Helix 24	AC6	A	449	466	Right-handed alpha
Helix 25	AC7	A	472	480	Right-handed alpha
Helix 26	AC8	A	499	502	Right-handed 310
Helix 27	AC9	A	503	508	Right-handed alpha
Helix 28	AD1	A	512	533	Right-handed alpha
Helix 29	AD2	A	548	559	Right-handed alpha
Helix 30	AD3	A	565	575	Right-handed alpha
Helix 31	AD4	A	581	588	Right-handed alpha
Helix 32	AD5	A	588	599	Right-handed alpha
Helix 33	AD6	B	338	343	Right-handed alpha
Helix 34	AD7	B	366	370	Right-handed 310
Helix 35	AD8	B	384	388	Right-handed 310
Helix 36	AD9	B	405	410	Right-handed 310
Helix 37	AE1	B	416	422	Right-handed alpha
Helix 38	AE2	H	28	32	Right-handed 310
Helix 39	AE3	H	62	65	Right-handed 310
Helix 40	AE4	H	87	91	Right-handed 310
Helix 41	AE5	L	121	127	Right-handed alpha
Helix 42	AE6	L	150	153	Right-handed 310
Helix 43	AE7	L	183	189	Right-handed alpha

There are 16 sheets in PDB entry 8XSJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	141	142	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	487	488	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	352	first strand
Strand 2	A	355	359	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	394	403	anti-parallel
Strand 3	B	507	516	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	380	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	392	first strand
Strand 2	B	524	525	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	72	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	133	first strand
Strand 2	H	146	154	anti-parallel
Strand 3	H	184	192	anti-parallel
Strand 4	H	172	174	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	133	first strand
Strand 2	H	146	154	anti-parallel
Strand 3	H	184	192	anti-parallel
Strand 4	H	178	180	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	160	163	first strand
Strand 2	H	203	209	anti-parallel
Strand 3	H	214	220	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	6	7	first strand
Strand 2	L	20	23	anti-parallel
Strand 3	L	71	74	anti-parallel
Strand 4	L	63	66	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	129	139	first strand
Strand 2	L	173	182	anti-parallel
Strand 3	L	159	163	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	145	148	first strand
Strand 2	L	191	197	anti-parallel
Strand 3	L	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XSJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XSJ