Analysis of interatomic Contacts of Structural Units in PDB entry:
8XSS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XSS entry

There are 2 chains in PDB entry 8XSS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1LEU 572
B
 ARG 13LYS 631
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 8XSS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-1 10Right-handed alpha
Helix 2
AA2
A
22 30Right-handed alpha
Helix 3
AA3
A
32 45Right-handed alpha
Helix 4
AA4
A
50 71Right-handed alpha
Helix 5
AA5
A
75 99Right-handed alpha
Helix 6
AA6
A
102 110Right-handed alpha
Helix 7
AA7
A
120 130Right-handed alpha
Helix 8
AA8
A
137 153Right-handed alpha
Helix 9
AA9
A
154 156Right-handed 310
Helix 10
AB1
A
157 203Right-handed alpha
Helix 11
AB2
A
203 210Right-handed alpha
Helix 12
AB3
A
220 233Right-handed alpha
Helix 13
AB4
A
233 238Right-handed alpha
Helix 14
AB5
A
240 265Right-handed alpha
Helix 15
AB6
A
270 293Right-handed alpha
Helix 16
AB7
A
296 313Right-handed alpha
Helix 17
AB8
A
373 382Right-handed alpha
Helix 18
AB9
A
398 402Right-handed 310
Helix 19
AC1
A
403 410Right-handed alpha
Helix 20
AC2
A
425 429Right-handed alpha
Helix 21
AC3
A
430 433Right-handed 310
Helix 22
AC4
A
437 448Right-handed alpha
Helix 23
AC5
A
450 455Right-handed alpha
Helix 24
AC6
A
474 487Right-handed alpha
Helix 25
AC7
A
503 518Right-handed alpha
Helix 26
AC8
A
552 558Right-handed alpha
Helix 27
AC9
A
560 569Right-handed alpha
Helix 28
AD1
B
17 27Right-handed alpha
Helix 29
AD2
B
28 30Right-handed 310
Helix 30
AD3
B
31 45Right-handed alpha
Helix 31
AD4
B
50 68Right-handed alpha
Helix 32
AD5
B
77 88Right-handed alpha
Helix 33
AD6
B
90 99Right-handed alpha
Helix 34
AD7
B
109 158Right-handed alpha
Helix 35
AD8
B
161 167Right-handed alpha
Helix 36
AD9
B
173 177Right-handed 310
Helix 37
AE1
B
181 190Right-handed alpha
Helix 38
AE2
B
195 213Right-handed alpha
Helix 39
AE3
B
213 222Right-handed alpha
Helix 40
AE4
B
223 238Right-handed alpha
Helix 41
AE5
B
238 262Right-handed alpha
Helix 42
AE6
B
262 268Right-handed alpha
Helix 43
AE7
B
271 299Right-handed alpha
Helix 44
AE8
B
300 305Right-handed alpha
Helix 45
AE9
B
306 308Right-handed 310
Helix 46
AF1
B
309 325Right-handed alpha
Helix 47
AF2
B
329 345Right-handed alpha
Helix 48
AF3
B
350 363Right-handed alpha
Helix 49
AF4
B
364 372Right-handed alpha
Helix 50
AF5
B
430 438Right-handed alpha
Helix 51
AF6
B
459 468Right-handed alpha
Helix 52
AF7
B
480 487Right-handed alpha
Helix 53
AF8
B
493 503Right-handed alpha
Helix 54
AF9
B
506 511Right-handed alpha
Helix 55
AG1
B
529 545Right-handed alpha
Helix 56
AG2
B
559 570Right-handed alpha
Helix 57
AG3
B
585 589Right-handed 310
Helix 58
AG4
B
608 614Right-handed alpha
Helix 59
AG5
B
617 627Right-handed alpha
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There are 4 sheets in PDB entry 8XSS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 341first strand
Strand 2
A
351 357anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 414first strand
Strand 2
A
492 496parallel
Strand 3
A
522 526parallel
Strand 4
A
363 367parallel
Strand 5
A
538 542parallel
Strand 6
A
547 551anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 424first strand
Strand 2
A
464 465anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
469 470first strand
Strand 2
B
548 552parallel
Strand 3
B
578 582parallel
Strand 4
B
421 423parallel
Strand 5
B
595 597parallel
Strand 6
B
605 607anti-parallel
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