Analysis of interatomic Contacts of Structural Units in PDB entry:
8XT9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XT9 entry

There are 2 chains in PDB entry 8XT9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 CYS 29LYS 821
A
 LEU 424THR 528
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8XT9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
121 127Right-handed alpha
Helix 2
AA2
C
169 176Right-handed alpha
Helix 3
AA3
C
243 247Right-handed 310
Helix 4
AA4
C
289 292Right-handed 310
Helix 5
AA5
C
337 342Right-handed alpha
Helix 6
AA6
C
466 471Right-handed alpha
Helix 7
AA7
C
538 566Right-handed alpha
Helix 8
AA8
C
571 601Right-handed alpha
Helix 9
AA9
C
604 614Right-handed alpha
Helix 10
AB1
C
615 649Right-handed alpha
Helix 11
AB2
C
657 679Right-handed alpha
Helix 12
AB3
C
680 682Right-handed 310
Helix 13
AB4
C
703 732Right-handed alpha
Helix 14
AB5
C
745 769Right-handed alpha
Helix 15
AB6
C
770 772Right-handed 310
Helix 16
AB7
C
778 790Right-handed alpha
Helix 17
AB8
C
791 804Right-handed alpha
Helix 18
AB9
C
805 821Right-handed alpha
Helix 19
AC1
A
459 461Right-handed 310
Helix 20
AC2
A
467 470Right-handed 310
Helix 21
AC3
A
492 496Right-handed 310
Helix 22
AC4
A
514 518Right-handed 310
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There are 8 sheets in PDB entry 8XT9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 36first strand
Strand 2
C
40 44anti-parallel
Strand 3
C
61 65parallel
Strand 4
C
85 87parallel
Strand 5
C
109 111parallel
Strand 6
C
133 135parallel
Strand 7
C
157 159parallel
Strand 8
C
181 183parallel
Strand 9
C
205 207parallel
Strand 10
C
229 231parallel
Strand 11
C
252 254parallel
Strand 12
C
276 278parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 72first strand
Strand 2
C
95 96parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
191 192first strand
Strand 2
C
215 216parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
262 263first strand
Strand 2
C
286 287parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
300 304first strand
Strand 2
C
323 327parallel
Strand 3
C
347 349parallel
Strand 4
C
369 371parallel
Strand 5
C
393 395parallel
Strand 6
C
417 419parallel
Strand 7
C
438 440parallel
Strand 8
C
461 463parallel
Strand 9
C
521 522parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 429first strand
Strand 2
A
483 488anti-parallel
Strand 3
A
473 477anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 465first strand
Strand 2
A
452 457anti-parallel
Strand 3
A
440 445anti-parallel
Strand 4
A
497 503anti-parallel
Strand 5
A
520 521anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 465first strand
Strand 2
A
452 457anti-parallel
Strand 3
A
440 445anti-parallel
Strand 4
A
497 503anti-parallel
Strand 5
A
525 527anti-parallel
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