Analysis of interatomic Contacts of Structural Units in PDB entry:
8XUD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XUD entry

There are 4 chains in PDB entry 8XUD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 25	LEU 288
B	ARG 25	LEU 288
C	ASP 25	LYS 671
D	ASP 25	ALA 94

There are 91 helices in PDB entry 8XUD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	53	Right-handed alpha
Helix 2	AA2	A	57	75	Right-handed alpha
Helix 3	AA3	A	77	92	Right-handed alpha
Helix 4	AA4	A	95	110	Right-handed alpha
Helix 5	AA5	A	111	126	Right-handed alpha
Helix 6	AA6	A	130	144	Right-handed alpha
Helix 7	AA7	A	145	160	Right-handed alpha
Helix 8	AA8	A	163	175	Right-handed alpha
Helix 9	AA9	A	178	193	Right-handed alpha
Helix 10	AB1	A	199	207	Right-handed alpha
Helix 11	AB2	A	211	223	Right-handed alpha
Helix 12	AB3	A	225	247	Right-handed alpha
Helix 13	AB4	A	249	262	Right-handed alpha
Helix 14	AB5	A	268	287	Right-handed alpha
Helix 15	AB6	B	37	53	Right-handed alpha
Helix 16	AB7	B	57	75	Right-handed alpha
Helix 17	AB8	B	77	92	Right-handed alpha
Helix 18	AB9	B	95	110	Right-handed alpha
Helix 19	AC1	B	111	126	Right-handed alpha
Helix 20	AC2	B	129	144	Right-handed alpha
Helix 21	AC3	B	145	160	Right-handed alpha
Helix 22	AC4	B	163	175	Right-handed alpha
Helix 23	AC5	B	178	193	Right-handed alpha
Helix 24	AC6	B	199	207	Right-handed alpha
Helix 25	AC7	B	211	223	Right-handed alpha
Helix 26	AC8	B	225	247	Right-handed alpha
Helix 27	AC9	B	249	262	Right-handed alpha
Helix 28	AD1	B	268	287	Right-handed alpha
Helix 29	AD2	C	40	55	Right-handed alpha
Helix 30	AD3	C	63	79	Right-handed alpha
Helix 31	AD4	C	80	83	Right-handed 310
Helix 32	AD5	C	86	94	Right-handed alpha
Helix 33	AD6	C	99	107	Right-handed alpha
Helix 34	AD7	C	109	133	Right-handed alpha
Helix 35	AD8	C	159	166	Right-handed alpha
Helix 36	AD9	C	166	181	Right-handed alpha
Helix 37	AE1	C	183	203	Right-handed alpha
Helix 38	AE2	C	206	223	Right-handed alpha
Helix 39	AE3	C	230	241	Right-handed alpha
Helix 40	AE4	C	268	273	Right-handed alpha
Helix 41	AE5	C	299	308	Right-handed alpha
Helix 42	AE6	C	368	374	Right-handed alpha
Helix 43	AE7	C	399	408	Right-handed alpha
Helix 44	AE8	C	451	465	Right-handed alpha
Helix 45	AE9	C	490	495	Right-handed alpha
Helix 46	AF1	C	567	578	Right-handed alpha
Helix 47	AF2	C	583	599	Right-handed alpha
Helix 48	AF3	C	608	635	Right-handed alpha
Helix 49	AF4	C	656	671	Right-handed alpha
Helix 50	AF5	D	28	32	Right-handed 310
Helix 51	AF6	D	40	55	Right-handed alpha
Helix 52	AF7	D	63	79	Right-handed alpha
Helix 53	AF8	D	86	94	Right-handed alpha
Helix 54	AF9	D	95	97	Right-handed 310
Helix 55	AG1	D	99	107	Right-handed alpha
Helix 56	AG2	D	109	127	Right-handed alpha
Helix 57	AG3	D	159	180	Right-handed alpha
Helix 58	AG4	D	183	203	Right-handed alpha
Helix 59	AG5	D	206	223	Right-handed alpha
Helix 60	AG6	D	230	241	Right-handed alpha
Helix 61	AG7	D	268	273	Right-handed alpha
Helix 62	AG8	D	299	308	Right-handed alpha
Helix 63	AG9	D	368	374	Right-handed alpha
Helix 64	AH1	D	399	408	Right-handed alpha
Helix 65	AH2	D	451	465	Right-handed alpha
Helix 66	AH3	D	490	495	Right-handed alpha
Helix 67	AH4	D	568	581	Right-handed alpha
Helix 68	AH5	D	582	599	Right-handed alpha
Helix 69	AH6	D	600	602	Right-handed 310
Helix 70	AH7	D	608	635	Right-handed alpha
Helix 71	AH8	D	653	673	Right-handed alpha
Helix 72	AH9	I	27	38	Right-handed alpha
Helix 73	AI1	I	39	52	Right-handed alpha
Helix 74	AI2	I	67	79	Right-handed alpha
Helix 75	AI3	I	87	93	Right-handed alpha
Helix 76	AI4	I	145	151	Right-handed alpha
Helix 77	AI5	J	23	36	Right-handed alpha
Helix 78	AI6	J	39	52	Right-handed alpha
Helix 79	AI7	J	67	79	Right-handed alpha
Helix 80	AI8	J	87	92	Right-handed alpha
Helix 81	AI9	J	145	151	Right-handed alpha
Helix 82	AJ1	K	27	37	Right-handed alpha
Helix 83	AJ2	K	39	52	Right-handed alpha
Helix 84	AJ3	K	67	80	Right-handed alpha
Helix 85	AJ4	K	87	93	Right-handed alpha
Helix 86	AJ5	K	145	151	Right-handed alpha
Helix 87	AJ6	L	22	36	Right-handed alpha
Helix 88	AJ7	L	39	52	Right-handed alpha
Helix 89	AJ8	L	67	79	Right-handed alpha
Helix 90	AJ9	L	87	92	Right-handed alpha
Helix 91	AK1	L	145	151	Right-handed alpha

There are 20 sheets in PDB entry 8XUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	229	first strand
Strand 2	C	503	512	anti-parallel
Strand 3	C	415	420	anti-parallel
Strand 4	C	426	430	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	229	first strand
Strand 2	C	503	512	anti-parallel
Strand 3	C	479	485	anti-parallel
Strand 4	M	4	5	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	247	first strand
Strand 2	C	329	339	anti-parallel
Strand 3	C	313	319	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	254	first strand
Strand 2	C	259	261	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	361	first strand
Strand 2	C	388	392	parallel
Strand 3	C	442	446	parallel
Strand 4	C	468	471	parallel
Strand 5	C	528	529	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	147	first strand
Strand 2	D	604	607	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	229	first strand
Strand 2	D	503	512	anti-parallel
Strand 3	D	417	420	anti-parallel
Strand 4	D	426	429	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	229	first strand
Strand 2	D	503	512	anti-parallel
Strand 3	D	479	485	anti-parallel
Strand 4	N	3	5	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	247	first strand
Strand 2	D	336	339	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	254	first strand
Strand 2	D	259	261	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	314	319	first strand
Strand 2	D	329	334	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	359	361	first strand
Strand 2	D	388	392	parallel
Strand 3	D	442	446	parallel
Strand 4	D	467	471	parallel
Strand 5	D	528	529	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	61	62	first strand
Strand 2	I	65	66	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	96	98	first strand
Strand 2	I	152	157	anti-parallel
Strand 3	I	108	111	anti-parallel
Strand 4	I	119	123	anti-parallel
Strand 5	I	128	133	anti-parallel
Strand 6	I	137	142	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	61	62	first strand
Strand 2	J	65	66	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	96	97	first strand
Strand 2	J	152	157	anti-parallel
Strand 3	J	108	111	anti-parallel
Strand 4	J	119	123	anti-parallel
Strand 5	J	128	132	anti-parallel
Strand 6	J	138	142	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	61	62	first strand
Strand 2	K	65	66	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	96	98	first strand
Strand 2	K	152	157	anti-parallel
Strand 3	K	108	111	anti-parallel
Strand 4	K	119	123	anti-parallel
Strand 5	K	128	133	anti-parallel
Strand 6	K	137	142	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	61	62	first strand
Strand 2	L	65	66	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	96	98	first strand
Strand 2	L	152	157	anti-parallel
Strand 3	L	108	111	anti-parallel
Strand 4	L	119	123	anti-parallel
Strand 5	L	128	132	anti-parallel
Strand 6	L	138	142	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XUD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XUD