Analysis of interatomic Contacts of Structural Units in PDB entry:
8XUJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XUJ entry

There are 2 chains in PDB entry 8XUJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 20	ASP 443
B	GLU 22	ASP 443

There are 45 helices in PDB entry 8XUJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	37	Right-handed 310
Helix 2	AA2	A	41	50	Right-handed alpha
Helix 3	AA3	A	51	53	Right-handed 310
Helix 4	AA4	A	83	100	Right-handed alpha
Helix 5	AA5	A	102	119	Right-handed alpha
Helix 6	AA6	A	147	163	Right-handed alpha
Helix 7	AA7	A	169	185	Right-handed alpha
Helix 8	AA8	A	186	193	Right-handed alpha
Helix 9	AA9	A	222	233	Right-handed alpha
Helix 10	AB1	A	236	240	Right-handed 310
Helix 11	AB2	A	243	248	Right-handed alpha
Helix 12	AB3	A	273	278	Right-handed alpha
Helix 13	AB4	A	279	282	Right-handed 310
Helix 14	AB5	A	284	289	Right-handed alpha
Helix 15	AB6	A	292	309	Right-handed alpha
Helix 16	AB7	A	329	332	Right-handed 310
Helix 17	AB8	A	333	340	Right-handed alpha
Helix 18	AB9	A	350	357	Right-handed alpha
Helix 19	AC1	A	358	360	Right-handed 310
Helix 20	AC2	A	361	376	Right-handed alpha
Helix 21	AC3	A	401	427	Right-handed alpha
Helix 22	AC4	A	429	439	Right-handed alpha
Helix 23	AC5	B	33	37	Right-handed 310
Helix 24	AC6	B	41	50	Right-handed alpha
Helix 25	AC7	B	51	53	Right-handed 310
Helix 26	AC8	B	83	100	Right-handed alpha
Helix 27	AC9	B	102	119	Right-handed alpha
Helix 28	AD1	B	147	165	Right-handed alpha
Helix 29	AD2	B	169	185	Right-handed alpha
Helix 30	AD3	B	186	193	Right-handed alpha
Helix 31	AD4	B	222	233	Right-handed alpha
Helix 32	AD5	B	234	240	Right-handed 310
Helix 33	AD6	B	243	248	Right-handed alpha
Helix 34	AD7	B	273	278	Right-handed alpha
Helix 35	AD8	B	279	282	Right-handed 310
Helix 36	AD9	B	284	289	Right-handed alpha
Helix 37	AE1	B	292	309	Right-handed alpha
Helix 38	AE2	B	329	332	Right-handed 310
Helix 39	AE3	B	333	340	Right-handed alpha
Helix 40	AE4	B	350	357	Right-handed alpha
Helix 41	AE5	B	358	360	Right-handed 310
Helix 42	AE6	B	361	376	Right-handed alpha
Helix 43	AE7	B	377	380	Right-handed 310
Helix 44	AE8	B	401	428	Right-handed alpha
Helix 45	AE9	B	429	438	Right-handed alpha

There are 14 sheets in PDB entry 8XUJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	68	71	anti-parallel
Strand 3	A	398	400	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	128	131	anti-parallel
Strand 3	A	138	146	anti-parallel
Strand 4	A	204	206	anti-parallel
Strand 5	A	209	210	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	214	215	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	258	first strand
Strand 2	A	261	263	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	318	first strand
Strand 2	A	324	325	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	389	390	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	381	first strand
Strand 2	A	384	385	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	68	71	anti-parallel
Strand 3	B	398	400	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	128	131	anti-parallel
Strand 3	B	138	146	anti-parallel
Strand 4	B	204	206	anti-parallel
Strand 5	B	209	210	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	122	first strand
Strand 2	B	125	126	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	195	first strand
Strand 2	B	200	202	anti-parallel
Strand 3	B	214	215	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	258	first strand
Strand 2	B	261	263	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	318	first strand
Strand 2	B	324	325	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	389	390	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XUJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XUJ