Analysis of interatomic Contacts of Structural Units in PDB entry:
8XUL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XUL entry

There is 1 chain in PDB entry 8XUL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 55PRO 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8XUL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 76Right-handed alpha
Helix 2
AA2
A
95 111Right-handed alpha
Helix 3
AA3
A
115 133Right-handed alpha
Helix 4
AA4
A
169 186Right-handed alpha
Helix 5
AA5
A
190 207Right-handed alpha
Helix 6
AA6
A
209 213Right-handed 310
Helix 7
AA7
A
240 250Right-handed alpha
Helix 8
AA8
A
257 264Right-handed alpha
Helix 9
AA9
A
266 270Right-handed alpha
Helix 10
AB1
A
284 288Right-handed 310
Helix 11
AB2
A
289 295Right-handed alpha
Helix 12
AB3
A
302 309Right-handed alpha
Helix 13
AB4
A
311 330Right-handed alpha
Helix 14
AB5
A
384 390Right-handed alpha
Helix 15
AB6
A
395 414Right-handed alpha
Helix 16
AB7
A
452 468Right-handed alpha
Helix 17
AB8
A
468 475Right-handed alpha
Helix 18
AB9
A
477 486Right-handed alpha
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There are 8 sheets in PDB entry 8XUL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
450 451anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
152 153anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
148 149anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
222 224anti-parallel
Strand 3
A
228 229anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 274first strand
Strand 2
A
277 280anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 357first strand
Strand 2
A
360 364anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 416first strand
Strand 2
A
419 420anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 425first strand
Strand 2
A
444 446anti-parallel
Strand 3
A
438 440anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il