Analysis of interatomic Contacts of Structural Units in PDB entry:
8XUM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XUM entry

There are 3 chains in PDB entry 8XUM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 GLY 441SER 550
A
 PRO 33LYS 821
B
 ILE 39CYS 141
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8XUM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
170 177Right-handed alpha
Helix 2
AA2
A
243 248Right-handed 310
Helix 3
AA3
A
338 343Right-handed alpha
Helix 4
AA4
A
471 476Right-handed alpha
Helix 5
AA5
A
538 565Right-handed alpha
Helix 6
AA6
A
571 601Right-handed alpha
Helix 7
AA7
A
604 607Right-handed 310
Helix 8
AA8
A
608 614Right-handed alpha
Helix 9
AA9
A
615 649Right-handed alpha
Helix 10
AB1
A
658 683Right-handed alpha
Helix 11
AB2
A
703 732Right-handed alpha
Helix 12
AB3
A
745 769Right-handed alpha
Helix 13
AB4
A
770 772Right-handed 310
Helix 14
AB5
A
778 790Right-handed alpha
Helix 15
AB6
A
791 804Right-handed alpha
Helix 16
AB7
A
805 821Right-handed alpha
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There are 13 sheets in PDB entry 8XUM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
442 448first strand
Strand 2
C
502 508anti-parallel
Strand 3
C
492 495anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
482 484first strand
Strand 2
C
470 476anti-parallel
Strand 3
C
459 464anti-parallel
Strand 4
C
517 522anti-parallel
Strand 5
C
539 540anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
482 484first strand
Strand 2
C
470 476anti-parallel
Strand 3
C
459 464anti-parallel
Strand 4
C
517 522anti-parallel
Strand 5
C
544 545anti-parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
41 43anti-parallel
Strand 3
A
62 64parallel
Strand 4
A
86 88parallel
Strand 5
A
110 112parallel
Strand 6
A
134 136parallel
Strand 7
A
158 160parallel
Strand 8
A
182 184parallel
Strand 9
A
206 208parallel
Strand 10
A
230 232parallel
Strand 11
A
253 255parallel
Strand 12
A
277 279parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
96 97parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
216 217parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
287 288parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 305first strand
Strand 2
A
326 328parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 350first strand
Strand 2
A
370 372parallel
Strand 3
A
394 396parallel
Strand 4
A
418 420parallel
Strand 5
A
439 441parallel
Strand 6
A
462 464parallel
Strand 7
A
521 522parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 47first strand
Strand 2
B
51 55anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 75first strand
Strand 2
B
60 66anti-parallel
Strand 3
B
91 95parallel
Strand 4
B
82 85anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 103first strand
Strand 2
B
112 113anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 120first strand
Strand 2
B
123 125anti-parallel
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