Analysis of interatomic Contacts of Structural Units in PDB entry:
8XUO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XUO entry

There are 2 chains in PDB entry 8XUO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 134	LEU 885
G	ASP 134	LEU 885

There are 66 helices in PDB entry 8XUO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	158	169	Right-handed alpha
Helix 2	AA2	A	188	198	Right-handed alpha
Helix 3	AA3	A	199	206	Right-handed alpha
Helix 4	AA4	A	219	232	Right-handed alpha
Helix 5	AA5	A	235	240	Right-handed alpha
Helix 6	AA6	A	242	258	Right-handed alpha
Helix 7	AA7	A	269	277	Right-handed alpha
Helix 8	AA8	A	278	280	Right-handed 310
Helix 9	AA9	A	295	303	Right-handed alpha
Helix 10	AB1	A	313	327	Right-handed alpha
Helix 11	AB2	A	332	347	Right-handed alpha
Helix 12	AB3	A	349	364	Right-handed alpha
Helix 13	AB4	A	366	381	Right-handed alpha
Helix 14	AB5	A	387	401	Right-handed alpha
Helix 15	AB6	A	402	412	Right-handed alpha
Helix 16	AB7	A	413	415	Right-handed 310
Helix 17	AB8	A	423	434	Right-handed alpha
Helix 18	AB9	A	443	458	Right-handed alpha
Helix 19	AC1	A	478	492	Right-handed alpha
Helix 20	AC2	A	509	516	Right-handed alpha
Helix 21	AC3	A	525	531	Right-handed alpha
Helix 22	AC4	A	557	563	Right-handed alpha
Helix 23	AC5	A	580	586	Right-handed 310
Helix 24	AC6	A	603	609	Right-handed 310
Helix 25	AC7	A	672	676	Right-handed 310
Helix 26	AC8	A	677	684	Right-handed alpha
Helix 27	AC9	A	696	701	Right-handed alpha
Helix 28	AD1	A	704	710	Right-handed alpha
Helix 29	AD2	A	711	713	Right-handed 310
Helix 30	AD3	A	737	741	Right-handed 310
Helix 31	AD4	A	759	766	Right-handed alpha
Helix 32	AD5	A	809	813	Right-handed 310
Helix 33	AD6	A	831	837	Right-handed 310
Helix 34	AD7	A	849	869	Right-handed alpha
Helix 35	AD8	G	158	168	Right-handed alpha
Helix 36	AD9	G	188	198	Right-handed alpha
Helix 37	AE1	G	199	206	Right-handed alpha
Helix 38	AE2	G	219	232	Right-handed alpha
Helix 39	AE3	G	242	258	Right-handed alpha
Helix 40	AE4	G	269	278	Right-handed alpha
Helix 41	AE5	G	295	303	Right-handed alpha
Helix 42	AE6	G	313	327	Right-handed alpha
Helix 43	AE7	G	332	346	Right-handed alpha
Helix 44	AE8	G	349	364	Right-handed alpha
Helix 45	AE9	G	366	381	Right-handed alpha
Helix 46	AF1	G	387	401	Right-handed alpha
Helix 47	AF2	G	402	412	Right-handed alpha
Helix 48	AF3	G	413	415	Right-handed 310
Helix 49	AF4	G	423	434	Right-handed alpha
Helix 50	AF5	G	443	458	Right-handed alpha
Helix 51	AF6	G	478	492	Right-handed alpha
Helix 52	AF7	G	509	515	Right-handed alpha
Helix 53	AF8	G	525	531	Right-handed alpha
Helix 54	AF9	G	557	563	Right-handed alpha
Helix 55	AG1	G	580	586	Right-handed 310
Helix 56	AG2	G	603	608	Right-handed 310
Helix 57	AG3	G	672	676	Right-handed 310
Helix 58	AG4	G	677	684	Right-handed alpha
Helix 59	AG5	G	695	701	Right-handed alpha
Helix 60	AG6	G	706	711	Right-handed alpha
Helix 61	AG7	G	737	741	Right-handed 310
Helix 62	AG8	G	756	758	Right-handed 310
Helix 63	AG9	G	759	766	Right-handed alpha
Helix 64	AH1	G	809	813	Right-handed 310
Helix 65	AH2	G	831	837	Right-handed 310
Helix 66	AH3	G	849	870	Right-handed alpha

There are 15 sheets in PDB entry 8XUO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	213	first strand
Strand 2	A	260	265	parallel
Strand 3	A	287	293	parallel
Strand 4	A	176	182	parallel
Strand 5	A	307	308	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	422	first strand
Strand 2	A	472	477	anti-parallel
Strand 3	A	461	466	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	498	first strand
Strand 2	A	518	520	parallel
Strand 3	A	540	542	parallel
Strand 4	A	568	575	parallel
Strand 5	A	549	550	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	498	first strand
Strand 2	A	518	520	parallel
Strand 3	A	540	542	parallel
Strand 4	A	568	575	parallel
Strand 5	A	591	596	parallel
Strand 6	A	614	619	parallel
Strand 7	A	638	641	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	602	first strand
Strand 2	A	623	626	parallel
Strand 3	A	644	646	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	690	694	first strand
Strand 2	A	719	724	parallel
Strand 3	A	747	751	parallel
Strand 4	A	771	775	parallel
Strand 5	A	795	799	parallel
Strand 6	A	818	822	parallel
Strand 7	A	842	846	parallel
Strand 8	A	877	880	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	755	756	first strand
Strand 2	A	779	780	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	783	785	first strand
Strand 2	A	805	807	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	208	213	first strand
Strand 2	G	260	265	parallel
Strand 3	G	286	293	parallel
Strand 4	G	175	182	parallel
Strand 5	G	307	308	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	421	422	first strand
Strand 2	G	472	477	anti-parallel
Strand 3	G	461	466	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	497	498	first strand
Strand 2	G	518	520	parallel
Strand 3	G	540	542	parallel
Strand 4	G	568	575	parallel
Strand 5	G	549	550	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	497	498	first strand
Strand 2	G	518	520	parallel
Strand 3	G	540	542	parallel
Strand 4	G	568	575	parallel
Strand 5	G	591	596	parallel
Strand 6	G	614	619	parallel
Strand 7	G	638	640	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	601	602	first strand
Strand 2	G	623	626	parallel
Strand 3	G	644	646	parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	667	671	first strand
Strand 2	G	689	694	parallel
Strand 3	G	719	724	parallel
Strand 4	G	747	751	parallel
Strand 5	G	771	775	parallel
Strand 6	G	795	799	parallel
Strand 7	G	818	822	parallel
Strand 8	G	842	846	parallel
Strand 9	G	877	880	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	783	785	first strand
Strand 2	G	805	807	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XUO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XUO