Analysis of interatomic Contacts of Structural Units in PDB entry:
8XUP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XUP entry

There are 6 chains in PDB entry 8XUP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 26	ASP 287
B	GLU 28	ASP 287
C	ARG 25	GLN 285
D	GLU 28	GLN 285
E	SER 22	SER 160
F	THR 21	ARG 77

There are104 helices in PDB entry 8XUP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	52	Right-handed alpha
Helix 2	AA2	A	57	75	Right-handed alpha
Helix 3	AA3	A	77	90	Right-handed alpha
Helix 4	AA4	A	95	109	Right-handed alpha
Helix 5	AA5	A	111	126	Right-handed alpha
Helix 6	AA6	A	130	143	Right-handed alpha
Helix 7	AA7	A	145	160	Right-handed alpha
Helix 8	AA8	A	163	178	Right-handed alpha
Helix 9	AA9	A	178	193	Right-handed alpha
Helix 10	AB1	A	199	207	Right-handed alpha
Helix 11	AB2	A	211	223	Right-handed alpha
Helix 12	AB3	A	225	246	Right-handed alpha
Helix 13	AB4	A	249	262	Right-handed alpha
Helix 14	AB5	A	268	285	Right-handed alpha
Helix 15	AB6	B	37	53	Right-handed alpha
Helix 16	AB7	B	57	75	Right-handed alpha
Helix 17	AB8	B	77	92	Right-handed alpha
Helix 18	AB9	B	95	109	Right-handed alpha
Helix 19	AC1	B	111	126	Right-handed alpha
Helix 20	AC2	B	130	144	Right-handed alpha
Helix 21	AC3	B	145	160	Right-handed alpha
Helix 22	AC4	B	163	176	Right-handed alpha
Helix 23	AC5	B	178	192	Right-handed alpha
Helix 24	AC6	B	199	207	Right-handed alpha
Helix 25	AC7	B	211	223	Right-handed alpha
Helix 26	AC8	B	225	246	Right-handed alpha
Helix 27	AC9	B	249	262	Right-handed alpha
Helix 28	AD1	B	268	286	Right-handed alpha
Helix 29	AD2	C	37	53	Right-handed alpha
Helix 30	AD3	C	57	75	Right-handed alpha
Helix 31	AD4	C	77	92	Right-handed alpha
Helix 32	AD5	C	95	109	Right-handed alpha
Helix 33	AD6	C	111	126	Right-handed alpha
Helix 34	AD7	C	130	143	Right-handed alpha
Helix 35	AD8	C	145	160	Right-handed alpha
Helix 36	AD9	C	163	176	Right-handed alpha
Helix 37	AE1	C	178	192	Right-handed alpha
Helix 38	AE2	C	199	207	Right-handed alpha
Helix 39	AE3	C	211	223	Right-handed alpha
Helix 40	AE4	C	225	247	Right-handed alpha
Helix 41	AE5	C	249	262	Right-handed alpha
Helix 42	AE6	C	268	284	Right-handed alpha
Helix 43	AE7	D	37	53	Right-handed alpha
Helix 44	AE8	D	57	75	Right-handed alpha
Helix 45	AE9	D	77	92	Right-handed alpha
Helix 46	AF1	D	95	110	Right-handed alpha
Helix 47	AF2	D	111	126	Right-handed alpha
Helix 48	AF3	D	129	143	Right-handed alpha
Helix 49	AF4	D	145	160	Right-handed alpha
Helix 50	AF5	D	163	178	Right-handed alpha
Helix 51	AF6	D	178	193	Right-handed alpha
Helix 52	AF7	D	199	207	Right-handed alpha
Helix 53	AF8	D	211	223	Right-handed alpha
Helix 54	AF9	D	225	246	Right-handed alpha
Helix 55	AG1	D	249	262	Right-handed alpha
Helix 56	AG2	D	268	283	Right-handed alpha
Helix 57	AG3	E	22	26	Right-handed 310
Helix 58	AG4	E	27	38	Right-handed alpha
Helix 59	AG5	E	39	52	Right-handed alpha
Helix 60	AG6	E	67	81	Right-handed alpha
Helix 61	AG7	E	87	92	Right-handed alpha
Helix 62	AG8	E	99	103	Right-handed 310
Helix 63	AG9	E	145	150	Right-handed alpha
Helix 64	AH1	F	27	38	Right-handed alpha
Helix 65	AH2	F	39	52	Right-handed alpha
Helix 66	AH3	F	67	81	Right-handed alpha
Helix 67	AH4	F	87	92	Right-handed alpha
Helix 68	AH5	F	99	103	Right-handed 310
Helix 69	AH6	F	145	150	Right-handed alpha
Helix 70	AH7	G	24	36	Right-handed alpha
Helix 71	AH8	G	39	52	Right-handed alpha
Helix 72	AH9	G	67	81	Right-handed alpha
Helix 73	AI1	G	87	92	Right-handed alpha
Helix 74	AI2	G	99	103	Right-handed 310
Helix 75	AI3	G	145	151	Right-handed alpha
Helix 76	AI4	H	23	36	Right-handed alpha
Helix 77	AI5	H	39	52	Right-handed alpha
Helix 78	AI6	H	67	81	Right-handed alpha
Helix 79	AI7	H	87	92	Right-handed alpha
Helix 80	AI8	H	99	103	Right-handed 310
Helix 81	AI9	H	145	150	Right-handed alpha
Helix 82	AJ1	I	27	38	Right-handed alpha
Helix 83	AJ2	I	39	52	Right-handed alpha
Helix 84	AJ3	I	67	81	Right-handed alpha
Helix 85	AJ4	I	87	92	Right-handed alpha
Helix 86	AJ5	I	99	103	Right-handed 310
Helix 87	AJ6	I	145	150	Right-handed alpha
Helix 88	AJ7	J	23	36	Right-handed alpha
Helix 89	AJ8	J	39	52	Right-handed alpha
Helix 90	AJ9	J	67	81	Right-handed alpha
Helix 91	AK1	J	87	92	Right-handed alpha
Helix 92	AK2	J	99	103	Right-handed 310
Helix 93	AK3	J	145	151	Right-handed alpha
Helix 94	AK4	K	27	38	Right-handed alpha
Helix 95	AK5	K	39	52	Right-handed alpha
Helix 96	AK6	K	67	81	Right-handed alpha
Helix 97	AK7	K	87	92	Right-handed alpha
Helix 98	AK8	K	99	103	Right-handed 310
Helix 99	AK9	K	145	150	Right-handed alpha
Helix 100	AL1	L	23	36	Right-handed alpha
Helix 101	AL2	L	39	52	Right-handed alpha
Helix 102	AL3	L	67	81	Right-handed alpha
Helix 103	AL4	L	87	92	Right-handed alpha
Helix 104	AL5	L	145	151	Right-handed alpha

There are 16 sheets in PDB entry 8XUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	62	first strand
Strand 2	E	65	66	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	152	157	anti-parallel
Strand 3	E	108	111	anti-parallel
Strand 4	E	119	125	anti-parallel
Strand 5	E	128	133	anti-parallel
Strand 6	E	137	142	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	61	62	first strand
Strand 2	F	65	66	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	96	98	first strand
Strand 2	F	152	157	anti-parallel
Strand 3	F	108	111	anti-parallel
Strand 4	F	119	125	anti-parallel
Strand 5	F	128	133	anti-parallel
Strand 6	F	137	142	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	62	first strand
Strand 2	G	65	66	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	96	98	first strand
Strand 2	G	152	157	anti-parallel
Strand 3	G	108	111	anti-parallel
Strand 4	G	119	125	anti-parallel
Strand 5	G	128	133	anti-parallel
Strand 6	G	137	142	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	61	62	first strand
Strand 2	H	65	66	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	96	97	first strand
Strand 2	H	152	157	anti-parallel
Strand 3	H	108	111	anti-parallel
Strand 4	H	119	123	anti-parallel
Strand 5	H	128	133	anti-parallel
Strand 6	H	137	142	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	61	62	first strand
Strand 2	I	65	66	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	96	98	first strand
Strand 2	I	152	157	anti-parallel
Strand 3	I	108	111	anti-parallel
Strand 4	I	119	123	anti-parallel
Strand 5	I	128	133	anti-parallel
Strand 6	I	137	142	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	61	62	first strand
Strand 2	J	65	66	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	96	97	first strand
Strand 2	J	152	157	anti-parallel
Strand 3	J	108	114	anti-parallel
Strand 4	J	117	123	anti-parallel
Strand 5	J	128	133	anti-parallel
Strand 6	J	137	142	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	61	62	first strand
Strand 2	K	65	66	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	96	97	first strand
Strand 2	K	154	157	anti-parallel
Strand 3	K	108	111	anti-parallel
Strand 4	K	119	125	anti-parallel
Strand 5	K	128	133	anti-parallel
Strand 6	K	137	142	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	61	62	first strand
Strand 2	L	65	66	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	96	98	first strand
Strand 2	L	152	157	anti-parallel
Strand 3	L	108	111	anti-parallel
Strand 4	L	119	123	anti-parallel
Strand 5	L	128	133	anti-parallel
Strand 6	L	137	142	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XUP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XUP