Analysis of interatomic Contacts of Structural Units in PDB entry:
8XUQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XUQ entry

There are 4 chains in PDB entry 8XUQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 885
E	MET 1	LEU 885
F	MET 1	LEU 885
G	MET 1	LEU 885

There are158 helices in PDB entry 8XUQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	20	Right-handed alpha
Helix 2	AA2	A	27	51	Right-handed alpha
Helix 3	AA3	A	56	63	Right-handed alpha
Helix 4	AA4	A	66	91	Right-handed alpha
Helix 5	AA5	A	101	127	Right-handed alpha
Helix 6	AA6	A	128	135	Right-handed alpha
Helix 7	AA7	A	158	169	Right-handed alpha
Helix 8	AA8	A	188	198	Right-handed alpha
Helix 9	AA9	A	199	206	Right-handed alpha
Helix 10	AB1	A	219	232	Right-handed alpha
Helix 11	AB2	A	235	240	Right-handed alpha
Helix 12	AB3	A	242	257	Right-handed alpha
Helix 13	AB4	A	269	277	Right-handed alpha
Helix 14	AB5	A	278	280	Right-handed 310
Helix 15	AB6	A	295	303	Right-handed alpha
Helix 16	AB7	A	313	327	Right-handed alpha
Helix 17	AB8	A	332	334	Right-handed 310
Helix 18	AB9	A	335	346	Right-handed alpha
Helix 19	AC1	A	349	364	Right-handed alpha
Helix 20	AC2	A	366	380	Right-handed alpha
Helix 21	AC3	A	387	400	Right-handed alpha
Helix 22	AC4	A	402	412	Right-handed alpha
Helix 23	AC5	A	423	433	Right-handed alpha
Helix 24	AC6	A	443	458	Right-handed alpha
Helix 25	AC7	A	478	492	Right-handed alpha
Helix 26	AC8	A	509	514	Right-handed alpha
Helix 27	AC9	A	525	530	Right-handed alpha
Helix 28	AD1	A	557	563	Right-handed alpha
Helix 29	AD2	A	582	586	Right-handed 310
Helix 30	AD3	A	603	609	Right-handed 310
Helix 31	AD4	A	672	676	Right-handed 310
Helix 32	AD5	A	677	682	Right-handed alpha
Helix 33	AD6	A	695	701	Right-handed alpha
Helix 34	AD7	A	705	712	Right-handed alpha
Helix 35	AD8	A	759	766	Right-handed alpha
Helix 36	AD9	A	831	837	Right-handed 310
Helix 37	AE1	A	849	869	Right-handed alpha
Helix 38	AE2	E	2	20	Right-handed alpha
Helix 39	AE3	E	22	26	Right-handed 310
Helix 40	AE4	E	27	51	Right-handed alpha
Helix 41	AE5	E	52	55	Right-handed 310
Helix 42	AE6	E	56	64	Right-handed alpha
Helix 43	AE7	E	65	91	Right-handed alpha
Helix 44	AE8	E	97	127	Right-handed alpha
Helix 45	AE9	E	128	133	Right-handed alpha
Helix 46	AF1	E	158	169	Right-handed alpha
Helix 47	AF2	E	188	198	Right-handed alpha
Helix 48	AF3	E	199	206	Right-handed alpha
Helix 49	AF4	E	219	232	Right-handed alpha
Helix 50	AF5	E	237	241	Right-handed 310
Helix 51	AF6	E	242	257	Right-handed alpha
Helix 52	AF7	E	269	277	Right-handed alpha
Helix 53	AF8	E	278	280	Right-handed 310
Helix 54	AF9	E	295	303	Right-handed alpha
Helix 55	AG1	E	313	327	Right-handed alpha
Helix 56	AG2	E	332	334	Right-handed 310
Helix 57	AG3	E	335	347	Right-handed alpha
Helix 58	AG4	E	349	364	Right-handed alpha
Helix 59	AG5	E	366	381	Right-handed alpha
Helix 60	AG6	E	387	400	Right-handed alpha
Helix 61	AG7	E	402	413	Right-handed alpha
Helix 62	AG8	E	423	434	Right-handed alpha
Helix 63	AG9	E	443	458	Right-handed alpha
Helix 64	AH1	E	478	492	Right-handed alpha
Helix 65	AH2	E	509	514	Right-handed alpha
Helix 66	AH3	E	525	530	Right-handed alpha
Helix 67	AH4	E	557	563	Right-handed alpha
Helix 68	AH5	E	580	585	Right-handed alpha
Helix 69	AH6	E	603	609	Right-handed 310
Helix 70	AH7	E	672	676	Right-handed 310
Helix 71	AH8	E	677	683	Right-handed alpha
Helix 72	AH9	E	695	701	Right-handed alpha
Helix 73	AI1	E	706	711	Right-handed alpha
Helix 74	AI2	E	712	714	Right-handed 310
Helix 75	AI3	E	759	766	Right-handed alpha
Helix 76	AI4	E	831	836	Right-handed 310
Helix 77	AI5	E	849	869	Right-handed alpha
Helix 78	AI6	F	2	20	Right-handed alpha
Helix 79	AI7	F	27	51	Right-handed alpha
Helix 80	AI8	F	56	64	Right-handed alpha
Helix 81	AI9	F	65	91	Right-handed alpha
Helix 82	AJ1	F	100	125	Right-handed alpha
Helix 83	AJ2	F	129	135	Right-handed alpha
Helix 84	AJ3	F	158	169	Right-handed alpha
Helix 85	AJ4	F	188	198	Right-handed alpha
Helix 86	AJ5	F	199	206	Right-handed alpha
Helix 87	AJ6	F	219	232	Right-handed alpha
Helix 88	AJ7	F	242	257	Right-handed alpha
Helix 89	AJ8	F	269	277	Right-handed alpha
Helix 90	AJ9	F	278	280	Right-handed 310
Helix 91	AK1	F	296	303	Right-handed alpha
Helix 92	AK2	F	313	327	Right-handed alpha
Helix 93	AK3	F	332	334	Right-handed 310
Helix 94	AK4	F	335	346	Right-handed alpha
Helix 95	AK5	F	349	364	Right-handed alpha
Helix 96	AK6	F	366	381	Right-handed alpha
Helix 97	AK7	F	387	400	Right-handed alpha
Helix 98	AK8	F	402	410	Right-handed alpha
Helix 99	AK9	F	423	433	Right-handed alpha
Helix 100	AL1	F	443	459	Right-handed alpha
Helix 101	AL2	F	478	492	Right-handed alpha
Helix 102	AL3	F	509	515	Right-handed alpha
Helix 103	AL4	F	524	531	Right-handed alpha
Helix 104	AL5	F	552	556	Right-handed 310
Helix 105	AL6	F	557	563	Right-handed alpha
Helix 106	AL7	F	580	586	Right-handed 310
Helix 107	AL8	F	603	609	Right-handed 310
Helix 108	AL9	F	629	633	Right-handed 310
Helix 109	AM1	F	672	676	Right-handed 310
Helix 110	AM2	F	677	683	Right-handed alpha
Helix 111	AM3	F	696	701	Right-handed alpha
Helix 112	AM4	F	706	711	Right-handed alpha
Helix 113	AM5	F	712	714	Right-handed 310
Helix 114	AM6	F	737	741	Right-handed 310
Helix 115	AM7	F	756	758	Right-handed 310
Helix 116	AM8	F	759	766	Right-handed alpha
Helix 117	AM9	F	831	837	Right-handed 310
Helix 118	AN1	F	849	869	Right-handed alpha
Helix 119	AN2	G	2	20	Right-handed alpha
Helix 120	AN3	G	27	51	Right-handed alpha
Helix 121	AN4	G	56	64	Right-handed alpha
Helix 122	AN5	G	65	91	Right-handed alpha
Helix 123	AN6	G	97	126	Right-handed alpha
Helix 124	AN7	G	130	135	Right-handed alpha
Helix 125	AN8	G	158	169	Right-handed alpha
Helix 126	AN9	G	188	197	Right-handed alpha
Helix 127	AO1	G	199	206	Right-handed alpha
Helix 128	AO2	G	219	232	Right-handed alpha
Helix 129	AO3	G	242	257	Right-handed alpha
Helix 130	AO4	G	269	278	Right-handed alpha
Helix 131	AO5	G	296	303	Right-handed alpha
Helix 132	AO6	G	313	327	Right-handed alpha
Helix 133	AO7	G	332	334	Right-handed 310
Helix 134	AO8	G	335	346	Right-handed alpha
Helix 135	AO9	G	349	364	Right-handed alpha
Helix 136	AP1	G	366	381	Right-handed alpha
Helix 137	AP2	G	387	400	Right-handed alpha
Helix 138	AP3	G	402	410	Right-handed alpha
Helix 139	AP4	G	411	415	Right-handed 310
Helix 140	AP5	G	423	433	Right-handed alpha
Helix 141	AP6	G	443	458	Right-handed alpha
Helix 142	AP7	G	478	492	Right-handed alpha
Helix 143	AP8	G	509	515	Right-handed alpha
Helix 144	AP9	G	524	531	Right-handed alpha
Helix 145	AQ1	G	552	556	Right-handed 310
Helix 146	AQ2	G	557	563	Right-handed alpha
Helix 147	AQ3	G	580	586	Right-handed 310
Helix 148	AQ4	G	603	609	Right-handed 310
Helix 149	AQ5	G	629	633	Right-handed 310
Helix 150	AQ6	G	672	676	Right-handed 310
Helix 151	AQ7	G	677	683	Right-handed alpha
Helix 152	AQ8	G	696	701	Right-handed alpha
Helix 153	AQ9	G	706	713	Right-handed alpha
Helix 154	AR1	G	737	741	Right-handed 310
Helix 155	AR2	G	756	758	Right-handed 310
Helix 156	AR3	G	759	766	Right-handed alpha
Helix 157	AR4	G	833	837	Right-handed 310
Helix 158	AR5	G	849	870	Right-handed alpha

There are 29 sheets in PDB entry 8XUQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	179	first strand
Strand 2	A	288	291	parallel
Strand 3	A	260	265	parallel
Strand 4	A	208	213	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	182	first strand
Strand 2	A	307	308	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	422	first strand
Strand 2	A	472	476	anti-parallel
Strand 3	A	462	466	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	498	first strand
Strand 2	A	519	520	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	550	first strand
Strand 2	A	568	576	parallel
Strand 3	A	591	596	parallel
Strand 4	A	614	618	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	602	first strand
Strand 2	A	623	626	parallel
Strand 3	A	644	646	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	668	671	first strand
Strand 2	A	689	694	parallel
Strand 3	A	719	724	parallel
Strand 4	A	747	751	parallel
Strand 5	A	771	775	parallel
Strand 6	A	795	799	parallel
Strand 7	A	818	822	parallel
Strand 8	A	842	845	parallel
Strand 9	A	877	880	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	755	756	first strand
Strand 2	A	779	780	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	783	785	first strand
Strand 2	A	805	807	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	179	first strand
Strand 2	E	288	293	parallel
Strand 3	E	260	267	parallel
Strand 4	E	208	213	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	181	182	first strand
Strand 2	E	307	308	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	421	422	first strand
Strand 2	E	472	476	anti-parallel
Strand 3	E	462	466	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	497	498	first strand
Strand 2	E	518	520	parallel
Strand 3	E	540	542	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	549	550	first strand
Strand 2	E	568	576	parallel
Strand 3	E	591	596	parallel
Strand 4	E	614	618	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	601	602	first strand
Strand 2	E	623	626	parallel
Strand 3	E	644	646	parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	667	671	first strand
Strand 2	E	689	694	parallel
Strand 3	E	720	724	parallel
Strand 4	E	747	751	parallel
Strand 5	E	771	775	parallel
Strand 6	E	795	799	parallel
Strand 7	E	818	822	parallel
Strand 8	E	842	846	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	755	756	first strand
Strand 2	E	779	780	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	783	785	first strand
Strand 2	E	805	807	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	208	213	first strand
Strand 2	F	260	265	parallel
Strand 3	F	286	293	parallel
Strand 4	F	175	182	parallel
Strand 5	F	307	308	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	421	422	first strand
Strand 2	F	474	476	anti-parallel
Strand 3	F	462	465	anti-parallel

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There are 16 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	497	498	first strand
Strand 2	F	518	521	parallel
Strand 3	F	540	543	parallel
Strand 4	F	568	575	parallel
Strand 5	F	591	595	parallel
Strand 6	F	614	618	parallel
Strand 7	F	638	640	parallel
Strand 8	F	667	671	parallel
Strand 9	F	689	694	parallel
Strand 10	F	719	724	parallel
Strand 11	F	747	751	parallel
Strand 12	F	771	775	parallel
Strand 13	F	795	799	parallel
Strand 14	F	818	822	parallel
Strand 15	F	842	846	parallel
Strand 16	F	877	880	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	601	602	first strand
Strand 2	F	623	626	parallel
Strand 3	F	644	646	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	783	785	first strand
Strand 2	F	805	807	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	210	213	first strand
Strand 2	G	261	265	parallel
Strand 3	G	286	293	parallel
Strand 4	G	175	182	parallel
Strand 5	G	307	308	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	421	422	first strand
Strand 2	G	472	476	anti-parallel
Strand 3	G	462	466	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	497	498	first strand
Strand 2	G	518	521	parallel
Strand 3	G	540	543	parallel
Strand 4	G	568	575	parallel
Strand 5	G	549	550	parallel

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There are 16 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	497	498	first strand
Strand 2	G	518	521	parallel
Strand 3	G	540	543	parallel
Strand 4	G	568	575	parallel
Strand 5	G	591	596	parallel
Strand 6	G	614	619	parallel
Strand 7	G	638	641	parallel
Strand 8	G	667	671	parallel
Strand 9	G	689	694	parallel
Strand 10	G	719	724	parallel
Strand 11	G	747	751	parallel
Strand 12	G	771	775	parallel
Strand 13	G	795	799	parallel
Strand 14	G	818	822	parallel
Strand 15	G	842	846	parallel
Strand 16	G	877	880	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	601	602	first strand
Strand 2	G	625	626	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	783	785	first strand
Strand 2	G	805	807	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XUQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XUQ