Analysis of interatomic Contacts of Structural Units in PDB entry:
8XV1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XV1 entry

There are 2 chains in PDB entry 8XV1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 331	LYS 528
D	SER 19	ALA 614

There are 32 helices in PDB entry 8XV1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	337	342	Right-handed alpha
Helix 2	AA2	A	349	353	Right-handed 310
Helix 3	AA3	A	406	410	Right-handed 310
Helix 4	AA4	A	416	422	Right-handed alpha
Helix 5	AA5	D	20	53	Right-handed alpha
Helix 6	AA6	D	56	81	Right-handed alpha
Helix 7	AA7	D	92	104	Right-handed alpha
Helix 8	AA8	D	109	130	Right-handed alpha
Helix 9	AA9	D	144	155	Right-handed alpha
Helix 10	AB1	D	157	195	Right-handed alpha
Helix 11	AB2	D	198	205	Right-handed alpha
Helix 12	AB3	D	206	208	Right-handed 310
Helix 13	AB4	D	220	252	Right-handed alpha
Helix 14	AB5	D	265	267	Right-handed 310
Helix 15	AB6	D	275	279	Right-handed 310
Helix 16	AB7	D	293	300	Right-handed alpha
Helix 17	AB8	D	303	317	Right-handed alpha
Helix 18	AB9	D	324	331	Right-handed alpha
Helix 19	AC1	D	365	385	Right-handed alpha
Helix 20	AC2	D	389	393	Right-handed 310
Helix 21	AC3	D	399	412	Right-handed alpha
Helix 22	AC4	D	414	422	Right-handed alpha
Helix 23	AC5	D	431	447	Right-handed alpha
Helix 24	AC6	D	449	466	Right-handed alpha
Helix 25	AC7	D	472	485	Right-handed alpha
Helix 26	AC8	D	499	502	Right-handed 310
Helix 27	AC9	D	503	508	Right-handed alpha
Helix 28	AD1	D	513	533	Right-handed alpha
Helix 29	AD2	D	548	559	Right-handed alpha
Helix 30	AD3	D	565	575	Right-handed alpha
Helix 31	AD4	D	581	588	Right-handed alpha
Helix 32	AD5	D	588	599	Right-handed alpha

There are 6 sheets in PDB entry 8XV1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	395	402	anti-parallel
Strand 3	A	507	513	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	379	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	491	493	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	487	488	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	133	first strand
Strand 2	D	141	143	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	263	first strand
Strand 2	D	487	488	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	350	first strand
Strand 2	D	356	359	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XV1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XV1