Analysis of interatomic Contacts of Structural Units in PDB entry:
8XV4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XV4 entry

There are 4 chains in PDB entry 8XV4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 134ASN 365
B
 LEU 134ASN 365
C
 VAL 88GLN 112
D
 VAL 88GLN 112
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8XV4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
191 194Right-handed 310
Helix 2
AA2
A
213 217Right-handed 310
Helix 3
AA3
A
326 328Right-handed 310
Helix 4
AA4
B
191 194Right-handed 310
Helix 5
AA5
B
213 217Right-handed 310
Helix 6
AA6
B
326 328Right-handed 310
Helix 7
AA7
C
90 97Right-handed alpha
Helix 8
AA8
C
97 110Right-handed alpha
Helix 9
AA9
D
90 97Right-handed alpha
Helix 10
AB1
D
97 109Right-handed alpha
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There are 8 sheets in PDB entry 8XV4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 200first strand
Strand 2
A
181 188anti-parallel
Strand 3
A
151 162anti-parallel
Strand 4
A
140 144anti-parallel
Strand 5
A
204 206anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
277 278anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 227first strand
Strand 2
A
237 248anti-parallel
Strand 3
A
253 259anti-parallel
Strand 4
A
269 271anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 332first strand
Strand 2
A
339 341anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 200first strand
Strand 2
B
181 188anti-parallel
Strand 3
B
151 162anti-parallel
Strand 4
B
140 144anti-parallel
Strand 5
B
204 206anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 212first strand
Strand 2
B
277 278anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 227first strand
Strand 2
B
237 248anti-parallel
Strand 3
B
253 259anti-parallel
Strand 4
B
266 271anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
330 332first strand
Strand 2
B
339 341anti-parallel
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