Analysis of interatomic Contacts of Structural Units in PDB entry:
8XV7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XV7 entry

There are 8 chains in PDB entry 8XV7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 129	ARG 364
B	GLU 77	GLU 111
C	GLY 129	ARG 364
D	VAL 85	THR 109
E	GLY 129	ARG 364
F	GLU 75	ARG 108
G	GLY 132	ARG 364
H	GLY 84	VAL 107

There are 17 helices in PDB entry 8XV7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	191	194	Right-handed 310
Helix 2	AA2	A	213	217	Right-handed 310
Helix 3	AA3	A	326	328	Right-handed 310
Helix 4	AA4	B	87	103	Right-handed alpha
Helix 5	AA5	C	191	194	Right-handed 310
Helix 6	AA6	C	213	217	Right-handed 310
Helix 7	AA7	C	326	328	Right-handed 310
Helix 8	AA8	D	87	103	Right-handed alpha
Helix 9	AA9	E	191	194	Right-handed 310
Helix 10	AB1	E	213	217	Right-handed 310
Helix 11	AB2	E	326	328	Right-handed 310
Helix 12	AB3	F	87	107	Right-handed alpha
Helix 13	AB4	G	178	180	Right-handed 310
Helix 14	AB5	G	191	194	Right-handed 310
Helix 15	AB6	G	213	217	Right-handed 310
Helix 16	AB7	G	326	328	Right-handed 310
Helix 17	AB8	H	87	106	Right-handed alpha

There are 13 sheets in PDB entry 8XV7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	200	first strand
Strand 2	A	181	188	anti-parallel
Strand 3	A	151	162	anti-parallel
Strand 4	A	140	144	anti-parallel
Strand 5	A	204	206	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	270	first strand
Strand 2	A	253	260	anti-parallel
Strand 3	A	237	248	anti-parallel
Strand 4	A	222	227	anti-parallel
Strand 5	A	278	279	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	332	first strand
Strand 2	A	339	341	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	80	first strand
Strand 2	F	78	80	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	200	first strand
Strand 2	C	181	188	anti-parallel
Strand 3	C	151	162	anti-parallel
Strand 4	C	140	144	anti-parallel
Strand 5	C	204	206	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	270	first strand
Strand 2	C	253	260	anti-parallel
Strand 3	C	237	248	anti-parallel
Strand 4	C	222	227	anti-parallel
Strand 5	C	278	279	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	332	first strand
Strand 2	C	339	341	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	196	200	first strand
Strand 2	E	181	188	anti-parallel
Strand 3	E	151	162	anti-parallel
Strand 4	E	140	144	anti-parallel
Strand 5	E	204	206	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	222	227	first strand
Strand 2	E	237	248	anti-parallel
Strand 3	E	253	260	anti-parallel
Strand 4	E	265	270	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	330	332	first strand
Strand 2	E	339	341	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	196	200	first strand
Strand 2	G	182	188	anti-parallel
Strand 3	G	151	161	anti-parallel
Strand 4	G	140	144	anti-parallel
Strand 5	G	204	206	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	222	227	first strand
Strand 2	G	237	248	anti-parallel
Strand 3	G	253	260	anti-parallel
Strand 4	G	265	270	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	330	332	first strand
Strand 2	G	339	341	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XV7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XV7