Analysis of interatomic Contacts of Structural Units in PDB entry:
8XVA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XVA entry

There are 11 chains in PDB entry 8XVA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 26	LEU 62
B	CYS 76	GLY 361
C	PRO 56	GLN 118
D	GLU 15	LEU 48
E	GLU 15	LEU 48
F	ASP 26	LEU 62
G	MET 1	GLY 55
H	PRO 56	PRO 123
I	CYS 76	GLY 361
J	MET 1	GLY 55
K	MET 1	GLU 145

There are 21 helices in PDB entry 8XVA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	37	Right-handed alpha
Helix 2	AA2	A	40	62	Right-handed alpha
Helix 3	AA3	B	84	92	Right-handed alpha
Helix 4	AA4	C	58	95	Right-handed alpha
Helix 5	AA5	C	95	118	Right-handed alpha
Helix 6	AA6	D	16	48	Right-handed alpha
Helix 7	AA7	E	16	48	Right-handed alpha
Helix 8	AA8	F	27	37	Right-handed alpha
Helix 9	AA9	F	40	62	Right-handed alpha
Helix 10	AB1	G	5	39	Right-handed alpha
Helix 11	AB2	G	48	55	Right-handed alpha
Helix 12	AB3	H	58	122	Right-handed alpha
Helix 13	AB4	I	84	92	Right-handed alpha
Helix 14	AB5	J	5	39	Right-handed alpha
Helix 15	AB6	J	48	55	Right-handed alpha
Helix 16	AB7	K	2	27	Right-handed alpha
Helix 17	AB8	K	35	60	Right-handed alpha
Helix 18	AB9	K	64	79	Right-handed alpha
Helix 19	AC1	K	84	96	Right-handed alpha
Helix 20	AC2	K	104	113	Right-handed alpha
Helix 21	AC3	K	118	145	Right-handed alpha

There are 4 sheets in PDB entry 8XVA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 20 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	107	first strand
Strand 2	B	113	121	anti-parallel
Strand 3	B	128	136	anti-parallel
Strand 4	B	149	154	anti-parallel
Strand 5	B	160	169	anti-parallel
Strand 6	B	172	180	anti-parallel
Strand 7	B	187	195	anti-parallel
Strand 8	B	199	209	anti-parallel
Strand 9	B	214	223	anti-parallel
Strand 10	B	229	240	anti-parallel
Strand 11	B	243	256	anti-parallel
Strand 12	B	259	266	anti-parallel
Strand 13	B	269	276	anti-parallel
Strand 14	B	282	291	anti-parallel
Strand 15	B	296	307	anti-parallel
Strand 16	B	312	319	anti-parallel
Strand 17	B	323	331	anti-parallel
Strand 18	B	337	346	anti-parallel
Strand 19	B	351	360	anti-parallel
Strand 20	B	100	107	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	142	first strand
Strand 2	B	145	146	anti-parallel

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There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	100	107	first strand
Strand 2	I	113	121	anti-parallel
Strand 3	I	128	136	anti-parallel
Strand 4	I	149	154	anti-parallel
Strand 5	I	160	169	anti-parallel
Strand 6	I	172	180	anti-parallel
Strand 7	I	187	195	anti-parallel
Strand 8	I	199	209	anti-parallel
Strand 9	I	214	223	anti-parallel
Strand 10	I	229	240	anti-parallel
Strand 11	I	243	256	anti-parallel
Strand 12	I	259	266	anti-parallel
Strand 13	I	269	276	anti-parallel
Strand 14	I	282	291	anti-parallel
Strand 15	I	296	307	anti-parallel
Strand 16	I	312	319	anti-parallel
Strand 17	I	323	331	anti-parallel
Strand 18	I	337	346	anti-parallel
Strand 19	I	351	360	anti-parallel
Strand 20	I	100	107	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	140	142	first strand
Strand 2	I	145	146	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XVA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XVA