Analysis of interatomic Contacts of Structural Units in PDB entry:
8XVB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XVB entry

There are 10 chains in PDB entry 8XVB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	A 1	A 24
A	LEU 67	ASN 312
B	LEU 67	ASN 312
C	LEU 67	ASN 312
D	LEU 67	ASN 312
E	LEU 67	ASN 312
F	LEU 67	ASN 312
G	LEU 67	ASN 312
H	LEU 67	ASN 312
J	T 1	T 24

There are119 helices in PDB entry 8XVB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	76	93	Right-handed alpha
Helix 2	AA2	A	105	117	Right-handed alpha
Helix 3	AA3	A	126	130	Right-handed 310
Helix 4	AA4	A	131	144	Right-handed alpha
Helix 5	AA5	A	151	164	Right-handed alpha
Helix 6	AA6	A	174	178	Right-handed 310
Helix 7	AA7	A	179	194	Right-handed alpha
Helix 8	AA8	A	203	208	Right-handed alpha
Helix 9	AA9	A	213	218	Right-handed alpha
Helix 10	AB1	A	218	225	Right-handed alpha
Helix 11	AB2	A	235	246	Right-handed alpha
Helix 12	AB3	A	250	262	Right-handed alpha
Helix 13	AB4	A	265	285	Right-handed alpha
Helix 14	AB5	A	289	299	Right-handed alpha
Helix 15	AB6	A	305	310	Right-handed alpha
Helix 16	AB7	B	76	93	Right-handed alpha
Helix 17	AB8	B	105	117	Right-handed alpha
Helix 18	AB9	B	126	130	Right-handed 310
Helix 19	AC1	B	131	144	Right-handed alpha
Helix 20	AC2	B	151	164	Right-handed alpha
Helix 21	AC3	B	174	178	Right-handed 310
Helix 22	AC4	B	179	194	Right-handed alpha
Helix 23	AC5	B	203	208	Right-handed alpha
Helix 24	AC6	B	213	218	Right-handed alpha
Helix 25	AC7	B	218	225	Right-handed alpha
Helix 26	AC8	B	235	246	Right-handed alpha
Helix 27	AC9	B	250	262	Right-handed alpha
Helix 28	AD1	B	265	285	Right-handed alpha
Helix 29	AD2	B	289	299	Right-handed alpha
Helix 30	AD3	B	305	310	Right-handed alpha
Helix 31	AD4	C	76	93	Right-handed alpha
Helix 32	AD5	C	106	117	Right-handed alpha
Helix 33	AD6	C	126	130	Right-handed 310
Helix 34	AD7	C	131	144	Right-handed alpha
Helix 35	AD8	C	151	164	Right-handed alpha
Helix 36	AD9	C	174	178	Right-handed 310
Helix 37	AE1	C	179	194	Right-handed alpha
Helix 38	AE2	C	203	208	Right-handed alpha
Helix 39	AE3	C	213	218	Right-handed alpha
Helix 40	AE4	C	218	224	Right-handed alpha
Helix 41	AE5	C	235	246	Right-handed alpha
Helix 42	AE6	C	250	262	Right-handed alpha
Helix 43	AE7	C	265	285	Right-handed alpha
Helix 44	AE8	C	289	299	Right-handed alpha
Helix 45	AE9	C	305	310	Right-handed alpha
Helix 46	AF1	D	76	93	Right-handed alpha
Helix 47	AF2	D	105	117	Right-handed alpha
Helix 48	AF3	D	131	144	Right-handed alpha
Helix 49	AF4	D	151	164	Right-handed alpha
Helix 50	AF5	D	174	178	Right-handed 310
Helix 51	AF6	D	179	194	Right-handed alpha
Helix 52	AF7	D	203	208	Right-handed alpha
Helix 53	AF8	D	213	218	Right-handed alpha
Helix 54	AF9	D	218	225	Right-handed alpha
Helix 55	AG1	D	235	246	Right-handed alpha
Helix 56	AG2	D	250	262	Right-handed alpha
Helix 57	AG3	D	265	285	Right-handed alpha
Helix 58	AG4	D	289	299	Right-handed alpha
Helix 59	AG5	D	300	302	Right-handed 310
Helix 60	AG6	E	76	93	Right-handed alpha
Helix 61	AG7	E	105	117	Right-handed alpha
Helix 62	AG8	E	131	143	Right-handed alpha
Helix 63	AG9	E	151	164	Right-handed alpha
Helix 64	AH1	E	174	178	Right-handed 310
Helix 65	AH2	E	179	194	Right-handed alpha
Helix 66	AH3	E	203	208	Right-handed alpha
Helix 67	AH4	E	213	218	Right-handed alpha
Helix 68	AH5	E	218	225	Right-handed alpha
Helix 69	AH6	E	235	246	Right-handed alpha
Helix 70	AH7	E	250	262	Right-handed alpha
Helix 71	AH8	E	265	285	Right-handed alpha
Helix 72	AH9	E	289	299	Right-handed alpha
Helix 73	AI1	E	305	312	Right-handed alpha
Helix 74	AI2	F	76	93	Right-handed alpha
Helix 75	AI3	F	105	117	Right-handed alpha
Helix 76	AI4	F	131	143	Right-handed alpha
Helix 77	AI5	F	151	164	Right-handed alpha
Helix 78	AI6	F	174	178	Right-handed 310
Helix 79	AI7	F	179	194	Right-handed alpha
Helix 80	AI8	F	203	208	Right-handed alpha
Helix 81	AI9	F	213	218	Right-handed alpha
Helix 82	AJ1	F	218	224	Right-handed alpha
Helix 83	AJ2	F	235	246	Right-handed alpha
Helix 84	AJ3	F	250	262	Right-handed alpha
Helix 85	AJ4	F	265	285	Right-handed alpha
Helix 86	AJ5	F	289	299	Right-handed alpha
Helix 87	AJ6	F	300	302	Right-handed 310
Helix 88	AJ7	F	305	310	Right-handed alpha
Helix 89	AJ8	G	76	93	Right-handed alpha
Helix 90	AJ9	G	106	117	Right-handed alpha
Helix 91	AK1	G	126	130	Right-handed 310
Helix 92	AK2	G	131	144	Right-handed alpha
Helix 93	AK3	G	151	164	Right-handed alpha
Helix 94	AK4	G	174	178	Right-handed 310
Helix 95	AK5	G	179	194	Right-handed alpha
Helix 96	AK6	G	203	208	Right-handed alpha
Helix 97	AK7	G	213	218	Right-handed alpha
Helix 98	AK8	G	218	224	Right-handed alpha
Helix 99	AK9	G	235	246	Right-handed alpha
Helix 100	AL1	G	250	262	Right-handed alpha
Helix 101	AL2	G	265	285	Right-handed alpha
Helix 102	AL3	G	289	299	Right-handed alpha
Helix 103	AL4	G	300	302	Right-handed 310
Helix 104	AL5	G	305	310	Right-handed alpha
Helix 105	AL6	H	76	93	Right-handed alpha
Helix 106	AL7	H	105	117	Right-handed alpha
Helix 107	AL8	H	126	130	Right-handed 310
Helix 108	AL9	H	131	144	Right-handed alpha
Helix 109	AM1	H	151	164	Right-handed alpha
Helix 110	AM2	H	174	178	Right-handed 310
Helix 111	AM3	H	179	194	Right-handed alpha
Helix 112	AM4	H	203	208	Right-handed alpha
Helix 113	AM5	H	213	218	Right-handed alpha
Helix 114	AM6	H	218	224	Right-handed alpha
Helix 115	AM7	H	235	246	Right-handed alpha
Helix 116	AM8	H	250	262	Right-handed alpha
Helix 117	AM9	H	265	285	Right-handed alpha
Helix 118	AN1	H	289	299	Right-handed alpha
Helix 119	AN2	H	305	312	Right-handed alpha

There are 8 sheets in PDB entry 8XVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	124	first strand
Strand 2	A	169	173	parallel
Strand 3	A	196	201	parallel
Strand 4	A	96	100	parallel
Strand 5	A	228	231	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	124	first strand
Strand 2	B	169	173	parallel
Strand 3	B	196	201	parallel
Strand 4	B	96	100	parallel
Strand 5	B	227	231	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	124	first strand
Strand 2	C	169	173	parallel
Strand 3	C	196	201	parallel
Strand 4	C	95	100	parallel
Strand 5	C	225	231	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	124	first strand
Strand 2	D	169	173	parallel
Strand 3	D	196	201	parallel
Strand 4	D	96	100	parallel
Strand 5	D	228	231	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	124	first strand
Strand 2	E	169	173	parallel
Strand 3	E	196	201	parallel
Strand 4	E	96	100	parallel
Strand 5	E	228	231	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	124	first strand
Strand 2	F	169	173	parallel
Strand 3	F	196	201	parallel
Strand 4	F	95	100	parallel
Strand 5	F	225	231	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	124	first strand
Strand 2	G	169	173	parallel
Strand 3	G	196	201	parallel
Strand 4	G	95	100	parallel
Strand 5	G	225	231	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	169	173	parallel
Strand 3	H	196	201	parallel
Strand 4	H	95	100	parallel
Strand 5	H	225	231	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XVB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XVB