Analysis of interatomic Contacts of Structural Units in PDB entry:
8XVD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XVD entry

There are 20 chains in PDB entry 8XVD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 67	ASP 305
B	LEU 67	ASP 305
C	LEU 67	ASP 305
D	LEU 67	ASP 305
E	LEU 67	ASP 305
F	LEU 67	ASP 305
G	LEU 67	ASP 305
H	LEU 67	ASP 305
I	LEU 67	ASP 305
J	LEU 67	ASP 305
K	LEU 67	ASP 305
L	LEU 67	ASP 305
M	LEU 67	ASP 305
N	LEU 67	ASP 305
O	LEU 67	ASP 305
P	LEU 67	ASP 305
Q	LEU 67	ASP 305
R	LEU 67	ASP 305
S	LEU 67	ASP 305
T	LEU 67	ASP 305

There are260 helices in PDB entry 8XVD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	76	93	Right-handed alpha
Helix 2	AA2	A	105	117	Right-handed alpha
Helix 3	AA3	A	126	130	Right-handed 310
Helix 4	AA4	A	131	143	Right-handed alpha
Helix 5	AA5	A	152	164	Right-handed alpha
Helix 6	AA6	A	174	178	Right-handed 310
Helix 7	AA7	A	179	192	Right-handed alpha
Helix 8	AA8	A	203	208	Right-handed alpha
Helix 9	AA9	A	218	225	Right-handed alpha
Helix 10	AB1	A	235	246	Right-handed alpha
Helix 11	AB2	A	250	263	Right-handed alpha
Helix 12	AB3	A	265	284	Right-handed alpha
Helix 13	AB4	A	289	298	Right-handed alpha
Helix 14	AB5	B	76	93	Right-handed alpha
Helix 15	AB6	B	105	117	Right-handed alpha
Helix 16	AB7	B	126	130	Right-handed 310
Helix 17	AB8	B	131	143	Right-handed alpha
Helix 18	AB9	B	152	164	Right-handed alpha
Helix 19	AC1	B	174	178	Right-handed 310
Helix 20	AC2	B	179	192	Right-handed alpha
Helix 21	AC3	B	203	208	Right-handed alpha
Helix 22	AC4	B	218	225	Right-handed alpha
Helix 23	AC5	B	235	246	Right-handed alpha
Helix 24	AC6	B	250	263	Right-handed alpha
Helix 25	AC7	B	265	284	Right-handed alpha
Helix 26	AC8	B	289	298	Right-handed alpha
Helix 27	AC9	C	76	93	Right-handed alpha
Helix 28	AD1	C	105	117	Right-handed alpha
Helix 29	AD2	C	126	130	Right-handed 310
Helix 30	AD3	C	131	143	Right-handed alpha
Helix 31	AD4	C	152	164	Right-handed alpha
Helix 32	AD5	C	174	178	Right-handed 310
Helix 33	AD6	C	179	192	Right-handed alpha
Helix 34	AD7	C	203	208	Right-handed alpha
Helix 35	AD8	C	218	225	Right-handed alpha
Helix 36	AD9	C	235	246	Right-handed alpha
Helix 37	AE1	C	250	263	Right-handed alpha
Helix 38	AE2	C	265	284	Right-handed alpha
Helix 39	AE3	C	289	298	Right-handed alpha
Helix 40	AE4	D	76	93	Right-handed alpha
Helix 41	AE5	D	105	117	Right-handed alpha
Helix 42	AE6	D	126	130	Right-handed 310
Helix 43	AE7	D	131	143	Right-handed alpha
Helix 44	AE8	D	152	164	Right-handed alpha
Helix 45	AE9	D	174	178	Right-handed 310
Helix 46	AF1	D	179	192	Right-handed alpha
Helix 47	AF2	D	203	208	Right-handed alpha
Helix 48	AF3	D	218	225	Right-handed alpha
Helix 49	AF4	D	235	246	Right-handed alpha
Helix 50	AF5	D	250	263	Right-handed alpha
Helix 51	AF6	D	265	284	Right-handed alpha
Helix 52	AF7	D	289	298	Right-handed alpha
Helix 53	AF8	E	76	93	Right-handed alpha
Helix 54	AF9	E	105	117	Right-handed alpha
Helix 55	AG1	E	126	130	Right-handed 310
Helix 56	AG2	E	131	143	Right-handed alpha
Helix 57	AG3	E	152	164	Right-handed alpha
Helix 58	AG4	E	174	178	Right-handed 310
Helix 59	AG5	E	179	192	Right-handed alpha
Helix 60	AG6	E	203	208	Right-handed alpha
Helix 61	AG7	E	218	225	Right-handed alpha
Helix 62	AG8	E	235	246	Right-handed alpha
Helix 63	AG9	E	250	263	Right-handed alpha
Helix 64	AH1	E	265	284	Right-handed alpha
Helix 65	AH2	E	289	298	Right-handed alpha
Helix 66	AH3	F	76	93	Right-handed alpha
Helix 67	AH4	F	105	117	Right-handed alpha
Helix 68	AH5	F	126	130	Right-handed 310
Helix 69	AH6	F	131	143	Right-handed alpha
Helix 70	AH7	F	152	164	Right-handed alpha
Helix 71	AH8	F	174	178	Right-handed 310
Helix 72	AH9	F	179	192	Right-handed alpha
Helix 73	AI1	F	203	208	Right-handed alpha
Helix 74	AI2	F	218	225	Right-handed alpha
Helix 75	AI3	F	235	246	Right-handed alpha
Helix 76	AI4	F	250	263	Right-handed alpha
Helix 77	AI5	F	265	284	Right-handed alpha
Helix 78	AI6	F	289	298	Right-handed alpha
Helix 79	AI7	G	76	93	Right-handed alpha
Helix 80	AI8	G	105	117	Right-handed alpha
Helix 81	AI9	G	126	130	Right-handed 310
Helix 82	AJ1	G	131	143	Right-handed alpha
Helix 83	AJ2	G	152	164	Right-handed alpha
Helix 84	AJ3	G	174	178	Right-handed 310
Helix 85	AJ4	G	179	192	Right-handed alpha
Helix 86	AJ5	G	203	208	Right-handed alpha
Helix 87	AJ6	G	218	225	Right-handed alpha
Helix 88	AJ7	G	235	246	Right-handed alpha
Helix 89	AJ8	G	250	263	Right-handed alpha
Helix 90	AJ9	G	265	284	Right-handed alpha
Helix 91	AK1	G	289	298	Right-handed alpha
Helix 92	AK2	H	76	93	Right-handed alpha
Helix 93	AK3	H	105	117	Right-handed alpha
Helix 94	AK4	H	126	130	Right-handed 310
Helix 95	AK5	H	131	143	Right-handed alpha
Helix 96	AK6	H	152	164	Right-handed alpha
Helix 97	AK7	H	174	178	Right-handed 310
Helix 98	AK8	H	179	192	Right-handed alpha
Helix 99	AK9	H	203	208	Right-handed alpha
Helix 100	AL1	H	218	225	Right-handed alpha
Helix 101	AL2	H	235	246	Right-handed alpha
Helix 102	AL3	H	250	263	Right-handed alpha
Helix 103	AL4	H	265	284	Right-handed alpha
Helix 104	AL5	H	289	298	Right-handed alpha
Helix 105	AL6	I	76	93	Right-handed alpha
Helix 106	AL7	I	105	117	Right-handed alpha
Helix 107	AL8	I	126	130	Right-handed 310
Helix 108	AL9	I	131	143	Right-handed alpha
Helix 109	AM1	I	152	164	Right-handed alpha
Helix 110	AM2	I	174	178	Right-handed 310
Helix 111	AM3	I	179	192	Right-handed alpha
Helix 112	AM4	I	203	208	Right-handed alpha
Helix 113	AM5	I	218	225	Right-handed alpha
Helix 114	AM6	I	235	246	Right-handed alpha
Helix 115	AM7	I	250	263	Right-handed alpha
Helix 116	AM8	I	265	284	Right-handed alpha
Helix 117	AM9	I	289	298	Right-handed alpha
Helix 118	AN1	J	76	93	Right-handed alpha
Helix 119	AN2	J	105	117	Right-handed alpha
Helix 120	AN3	J	126	130	Right-handed 310
Helix 121	AN4	J	131	143	Right-handed alpha
Helix 122	AN5	J	152	164	Right-handed alpha
Helix 123	AN6	J	174	178	Right-handed 310
Helix 124	AN7	J	179	192	Right-handed alpha
Helix 125	AN8	J	203	208	Right-handed alpha
Helix 126	AN9	J	218	225	Right-handed alpha
Helix 127	AO1	J	235	246	Right-handed alpha
Helix 128	AO2	J	250	263	Right-handed alpha
Helix 129	AO3	J	265	284	Right-handed alpha
Helix 130	AO4	J	289	298	Right-handed alpha
Helix 131	AO5	K	76	93	Right-handed alpha
Helix 132	AO6	K	105	117	Right-handed alpha
Helix 133	AO7	K	126	130	Right-handed 310
Helix 134	AO8	K	131	143	Right-handed alpha
Helix 135	AO9	K	152	164	Right-handed alpha
Helix 136	AP1	K	174	178	Right-handed 310
Helix 137	AP2	K	179	192	Right-handed alpha
Helix 138	AP3	K	203	208	Right-handed alpha
Helix 139	AP4	K	218	225	Right-handed alpha
Helix 140	AP5	K	235	246	Right-handed alpha
Helix 141	AP6	K	250	263	Right-handed alpha
Helix 142	AP7	K	265	284	Right-handed alpha
Helix 143	AP8	K	289	298	Right-handed alpha
Helix 144	AP9	L	76	93	Right-handed alpha
Helix 145	AQ1	L	105	117	Right-handed alpha
Helix 146	AQ2	L	126	130	Right-handed 310
Helix 147	AQ3	L	131	143	Right-handed alpha
Helix 148	AQ4	L	152	164	Right-handed alpha
Helix 149	AQ5	L	174	178	Right-handed 310
Helix 150	AQ6	L	179	192	Right-handed alpha
Helix 151	AQ7	L	203	208	Right-handed alpha
Helix 152	AQ8	L	218	225	Right-handed alpha
Helix 153	AQ9	L	235	246	Right-handed alpha
Helix 154	AR1	L	250	263	Right-handed alpha
Helix 155	AR2	L	265	284	Right-handed alpha
Helix 156	AR3	L	289	298	Right-handed alpha
Helix 157	AR4	M	76	93	Right-handed alpha
Helix 158	AR5	M	105	117	Right-handed alpha
Helix 159	AR6	M	126	130	Right-handed 310
Helix 160	AR7	M	131	143	Right-handed alpha
Helix 161	AR8	M	152	164	Right-handed alpha
Helix 162	AR9	M	174	178	Right-handed 310
Helix 163	AS1	M	179	192	Right-handed alpha
Helix 164	AS2	M	203	208	Right-handed alpha
Helix 165	AS3	M	218	225	Right-handed alpha
Helix 166	AS4	M	235	246	Right-handed alpha
Helix 167	AS5	M	250	263	Right-handed alpha
Helix 168	AS6	M	265	284	Right-handed alpha
Helix 169	AS7	M	289	298	Right-handed alpha
Helix 170	AS8	N	76	93	Right-handed alpha
Helix 171	AS9	N	105	117	Right-handed alpha
Helix 172	AT1	N	126	130	Right-handed 310
Helix 173	AT2	N	131	143	Right-handed alpha
Helix 174	AT3	N	152	164	Right-handed alpha
Helix 175	AT4	N	174	178	Right-handed 310
Helix 176	AT5	N	179	192	Right-handed alpha
Helix 177	AT6	N	203	208	Right-handed alpha
Helix 178	AT7	N	218	225	Right-handed alpha
Helix 179	AT8	N	235	246	Right-handed alpha
Helix 180	AT9	N	250	263	Right-handed alpha
Helix 181	AU1	N	265	284	Right-handed alpha
Helix 182	AU2	N	289	298	Right-handed alpha
Helix 183	AU3	O	76	93	Right-handed alpha
Helix 184	AU4	O	105	117	Right-handed alpha
Helix 185	AU5	O	126	130	Right-handed 310
Helix 186	AU6	O	131	143	Right-handed alpha
Helix 187	AU7	O	152	164	Right-handed alpha
Helix 188	AU8	O	174	178	Right-handed 310
Helix 189	AU9	O	179	192	Right-handed alpha
Helix 190	AV1	O	203	208	Right-handed alpha
Helix 191	AV2	O	218	225	Right-handed alpha
Helix 192	AV3	O	235	246	Right-handed alpha
Helix 193	AV4	O	250	263	Right-handed alpha
Helix 194	AV5	O	265	284	Right-handed alpha
Helix 195	AV6	O	289	298	Right-handed alpha
Helix 196	AV7	P	76	93	Right-handed alpha
Helix 197	AV8	P	105	117	Right-handed alpha
Helix 198	AV9	P	126	130	Right-handed 310
Helix 199	AW1	P	131	143	Right-handed alpha
Helix 200	AW2	P	152	164	Right-handed alpha
Helix 201	AW3	P	174	178	Right-handed 310
Helix 202	AW4	P	179	192	Right-handed alpha
Helix 203	AW5	P	203	208	Right-handed alpha
Helix 204	AW6	P	218	225	Right-handed alpha
Helix 205	AW7	P	235	246	Right-handed alpha
Helix 206	AW8	P	250	263	Right-handed alpha
Helix 207	AW9	P	265	284	Right-handed alpha
Helix 208	AX1	P	289	298	Right-handed alpha
Helix 209	AX2	Q	76	93	Right-handed alpha
Helix 210	AX3	Q	105	117	Right-handed alpha
Helix 211	AX4	Q	126	130	Right-handed 310
Helix 212	AX5	Q	131	143	Right-handed alpha
Helix 213	AX6	Q	152	164	Right-handed alpha
Helix 214	AX7	Q	174	178	Right-handed 310
Helix 215	AX8	Q	179	192	Right-handed alpha
Helix 216	AX9	Q	203	208	Right-handed alpha
Helix 217	AY1	Q	218	225	Right-handed alpha
Helix 218	AY2	Q	235	246	Right-handed alpha
Helix 219	AY3	Q	250	263	Right-handed alpha
Helix 220	AY4	Q	265	284	Right-handed alpha
Helix 221	AY5	Q	289	298	Right-handed alpha
Helix 222	AY6	R	76	93	Right-handed alpha
Helix 223	AY7	R	105	117	Right-handed alpha
Helix 224	AY8	R	126	130	Right-handed 310
Helix 225	AY9	R	131	143	Right-handed alpha
Helix 226	AZ1	R	152	164	Right-handed alpha
Helix 227	AZ2	R	174	178	Right-handed 310
Helix 228	AZ3	R	179	192	Right-handed alpha
Helix 229	AZ4	R	203	208	Right-handed alpha
Helix 230	AZ5	R	218	225	Right-handed alpha
Helix 231	AZ6	R	235	246	Right-handed alpha
Helix 232	AZ7	R	250	263	Right-handed alpha
Helix 233	AZ8	R	265	284	Right-handed alpha
Helix 234	AZ9	R	289	298	Right-handed alpha
Helix 235	BA1	S	76	93	Right-handed alpha
Helix 236	BA2	S	105	117	Right-handed alpha
Helix 237	BA3	S	126	130	Right-handed 310
Helix 238	BA4	S	131	143	Right-handed alpha
Helix 239	BA5	S	152	164	Right-handed alpha
Helix 240	BA6	S	174	178	Right-handed 310
Helix 241	BA7	S	179	192	Right-handed alpha
Helix 242	BA8	S	203	208	Right-handed alpha
Helix 243	BA9	S	218	225	Right-handed alpha
Helix 244	BB1	S	235	246	Right-handed alpha
Helix 245	BB2	S	250	263	Right-handed alpha
Helix 246	BB3	S	265	284	Right-handed alpha
Helix 247	BB4	S	289	298	Right-handed alpha
Helix 248	BB5	T	76	93	Right-handed alpha
Helix 249	BB6	T	105	117	Right-handed alpha
Helix 250	BB7	T	126	130	Right-handed 310
Helix 251	BB8	T	131	143	Right-handed alpha
Helix 252	BB9	T	152	164	Right-handed alpha
Helix 253	BC1	T	174	178	Right-handed 310
Helix 254	BC2	T	179	192	Right-handed alpha
Helix 255	BC3	T	203	208	Right-handed alpha
Helix 256	BC4	T	218	225	Right-handed alpha
Helix 257	BC5	T	235	246	Right-handed alpha
Helix 258	BC6	T	250	263	Right-handed alpha
Helix 259	BC7	T	265	284	Right-handed alpha
Helix 260	BC8	T	289	298	Right-handed alpha

There are 20 sheets in PDB entry 8XVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	169	173	parallel
Strand 3	A	196	199	parallel
Strand 4	A	95	97	parallel
Strand 5	A	227	228	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	124	first strand
Strand 2	B	169	173	parallel
Strand 3	B	196	199	parallel
Strand 4	B	95	97	parallel
Strand 5	B	227	228	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	124	first strand
Strand 2	C	169	173	parallel
Strand 3	C	196	199	parallel
Strand 4	C	95	97	parallel
Strand 5	C	227	228	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	124	first strand
Strand 2	D	169	173	parallel
Strand 3	D	196	199	parallel
Strand 4	D	95	97	parallel
Strand 5	D	227	228	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	124	first strand
Strand 2	E	169	173	parallel
Strand 3	E	196	199	parallel
Strand 4	E	95	97	parallel
Strand 5	E	227	228	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	121	124	first strand
Strand 2	F	169	173	parallel
Strand 3	F	196	199	parallel
Strand 4	F	95	97	parallel
Strand 5	F	227	228	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	121	124	first strand
Strand 2	G	169	173	parallel
Strand 3	G	196	199	parallel
Strand 4	G	95	97	parallel
Strand 5	G	227	228	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	121	124	first strand
Strand 2	H	169	173	parallel
Strand 3	H	196	199	parallel
Strand 4	H	95	97	parallel
Strand 5	H	227	228	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	121	124	first strand
Strand 2	I	169	173	parallel
Strand 3	I	196	199	parallel
Strand 4	I	95	97	parallel
Strand 5	I	227	228	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	121	124	first strand
Strand 2	J	169	173	parallel
Strand 3	J	196	199	parallel
Strand 4	J	95	97	parallel
Strand 5	J	227	228	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	121	124	first strand
Strand 2	K	169	173	parallel
Strand 3	K	196	199	parallel
Strand 4	K	95	97	parallel
Strand 5	K	227	228	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	121	124	first strand
Strand 2	L	169	173	parallel
Strand 3	L	196	199	parallel
Strand 4	L	95	97	parallel
Strand 5	L	227	228	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	121	124	first strand
Strand 2	M	169	173	parallel
Strand 3	M	196	199	parallel
Strand 4	M	95	97	parallel
Strand 5	M	227	228	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	121	124	first strand
Strand 2	N	169	173	parallel
Strand 3	N	196	199	parallel
Strand 4	N	95	97	parallel
Strand 5	N	227	228	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	121	124	first strand
Strand 2	O	169	173	parallel
Strand 3	O	196	199	parallel
Strand 4	O	95	97	parallel
Strand 5	O	227	228	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	121	124	first strand
Strand 2	P	169	173	parallel
Strand 3	P	196	199	parallel
Strand 4	P	95	97	parallel
Strand 5	P	227	228	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	121	124	first strand
Strand 2	Q	169	173	parallel
Strand 3	Q	196	199	parallel
Strand 4	Q	95	97	parallel
Strand 5	Q	227	228	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	121	124	first strand
Strand 2	R	169	173	parallel
Strand 3	R	196	199	parallel
Strand 4	R	95	97	parallel
Strand 5	R	227	228	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	121	124	first strand
Strand 2	S	169	173	parallel
Strand 3	S	196	199	parallel
Strand 4	S	95	97	parallel
Strand 5	S	227	228	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	121	124	first strand
Strand 2	T	169	173	parallel
Strand 3	T	196	199	parallel
Strand 4	T	95	97	parallel
Strand 5	T	227	228	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XVD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XVD