Analysis of interatomic Contacts of Structural Units in PDB entry:
8XVI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XVI entry

There are 6 chains in PDB entry 8XVI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	VAL 384
B	GLU 3	ASN 340
G	THR 6	ARG 62
N	GLN 1	VAL 126
R	ASN 67	SER 382
T	CYS 1	TRP 21

There are 26 helices in PDB entry 8XVI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	38	Right-handed alpha
Helix 2	AA2	A	53	60	Right-handed alpha
Helix 3	AA3	A	233	238	Right-handed 310
Helix 4	AA4	A	256	268	Right-handed alpha
Helix 5	AA5	A	283	293	Right-handed alpha
Helix 6	AA6	A	321	342	Right-handed alpha
Helix 7	AA7	A	362	379	Right-handed alpha
Helix 8	AA8	B	4	25	Right-handed alpha
Helix 9	AA9	B	29	35	Right-handed alpha
Helix 10	AB1	G	7	24	Right-handed alpha
Helix 11	AB2	G	29	45	Right-handed alpha
Helix 12	AB3	G	46	48	Right-handed 310
Helix 13	AB4	N	28	32	Right-handed 310
Helix 14	AB5	N	61	65	Right-handed 310
Helix 15	AB6	R	76	108	Right-handed alpha
Helix 16	AB7	R	113	143	Right-handed alpha
Helix 17	AB8	R	151	188	Right-handed alpha
Helix 18	AB9	R	199	216	Right-handed alpha
Helix 19	AC1	R	217	222	Right-handed alpha
Helix 20	AC2	R	245	254	Right-handed alpha
Helix 21	AC3	R	255	284	Right-handed alpha
Helix 22	AC4	R	294	332	Right-handed alpha
Helix 23	AC5	R	339	360	Right-handed alpha
Helix 24	AC6	R	363	371	Right-handed alpha
Helix 25	AC7	R	375	382	Right-handed alpha
Helix 26	AC8	T	8	17	Right-handed alpha

There are 12 sheets in PDB entry 8XVI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	214	first strand
Strand 2	A	217	224	anti-parallel
Strand 3	A	41	46	parallel
Strand 4	A	243	249	parallel
Strand 5	A	276	282	parallel
Strand 6	A	349	353	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	111	114	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	135	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	189	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	241	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	277	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	304	309	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	58	59	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	35	39	anti-parallel
Strand 4	N	92	96	anti-parallel
Strand 5	N	122	124	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	225	227	first strand
Strand 2	R	238	240	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	230	231	first strand
Strand 2	R	234	235	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XVI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XVI