Analysis of interatomic Contacts of Structural Units in PDB entry:
8XVQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XVQ entry

There are 2 chains in PDB entry 8XVQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 177	GLY 696
B	LYS 178	GLY 694

There are 34 helices in PDB entry 8XVQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	180	190	Right-handed alpha
Helix 2	AA2	A	193	197	Right-handed 310
Helix 3	AA3	A	198	207	Right-handed alpha
Helix 4	AA4	A	221	235	Right-handed alpha
Helix 5	AA5	A	245	249	Right-handed 310
Helix 6	AA6	A	252	254	Right-handed 310
Helix 7	AA7	A	318	322	Right-handed 310
Helix 8	AA8	A	406	414	Right-handed alpha
Helix 9	AA9	A	450	460	Right-handed 310
Helix 10	AB1	A	463	477	Right-handed alpha
Helix 11	AB2	A	477	487	Right-handed alpha
Helix 12	AB3	A	543	545	Right-handed 310
Helix 13	AB4	A	547	559	Right-handed alpha
Helix 14	AB5	A	663	667	Right-handed 310
Helix 15	AB6	A	668	672	Right-handed 310
Helix 16	AB7	A	682	686	Right-handed 310
Helix 17	AB8	A	689	694	Right-handed alpha
Helix 18	AB9	B	180	190	Right-handed alpha
Helix 19	AC1	B	193	197	Right-handed 310
Helix 20	AC2	B	198	208	Right-handed alpha
Helix 21	AC3	B	221	235	Right-handed alpha
Helix 22	AC4	B	245	249	Right-handed 310
Helix 23	AC5	B	252	254	Right-handed 310
Helix 24	AC6	B	318	322	Right-handed 310
Helix 25	AC7	B	406	414	Right-handed alpha
Helix 26	AC8	B	450	460	Right-handed 310
Helix 27	AC9	B	463	477	Right-handed alpha
Helix 28	AD1	B	477	487	Right-handed alpha
Helix 29	AD2	B	543	545	Right-handed 310
Helix 30	AD3	B	547	559	Right-handed alpha
Helix 31	AD4	B	663	667	Right-handed 310
Helix 32	AD5	B	668	672	Right-handed 310
Helix 33	AD6	B	682	686	Right-handed 310
Helix 34	AD7	B	689	694	Right-handed alpha

There are 16 sheets in PDB entry 8XVQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	219	first strand
Strand 2	A	513	514	parallel
Strand 3	A	489	496	anti-parallel
Strand 4	A	435	442	anti-parallel
Strand 5	A	423	429	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	219	first strand
Strand 2	A	513	514	parallel
Strand 3	A	489	496	anti-parallel
Strand 4	A	505	508	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	258	first strand
Strand 2	A	265	267	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	327	first strand
Strand 2	A	306	313	anti-parallel
Strand 3	A	290	298	anti-parallel
Strand 4	A	269	277	anti-parallel
Strand 5	A	337	346	parallel
Strand 6	A	352	360	anti-parallel
Strand 7	A	368	381	anti-parallel
Strand 8	A	384	397	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	530	first strand
Strand 2	A	533	541	anti-parallel
Strand 3	A	562	569	anti-parallel
Strand 4	A	577	578	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	530	first strand
Strand 2	A	533	541	anti-parallel
Strand 3	A	562	569	anti-parallel
Strand 4	A	584	587	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	598	605	first strand
Strand 2	A	612	619	anti-parallel
Strand 3	A	633	634	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	598	605	first strand
Strand 2	A	612	619	anti-parallel
Strand 3	A	636	643	anti-parallel
Strand 4	A	647	657	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	219	first strand
Strand 2	B	513	514	parallel
Strand 3	B	489	496	anti-parallel
Strand 4	B	435	442	anti-parallel
Strand 5	B	423	429	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	219	first strand
Strand 2	B	513	514	parallel
Strand 3	B	489	496	anti-parallel
Strand 4	B	505	508	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	258	first strand
Strand 2	B	265	267	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	327	first strand
Strand 2	B	306	313	anti-parallel
Strand 3	B	290	298	anti-parallel
Strand 4	B	269	277	anti-parallel
Strand 5	B	337	346	parallel
Strand 6	B	352	360	anti-parallel
Strand 7	B	368	381	anti-parallel
Strand 8	B	384	397	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	523	530	first strand
Strand 2	B	533	541	anti-parallel
Strand 3	B	562	569	anti-parallel
Strand 4	B	577	578	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	523	530	first strand
Strand 2	B	533	541	anti-parallel
Strand 3	B	562	569	anti-parallel
Strand 4	B	584	587	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	598	606	first strand
Strand 2	B	609	619	anti-parallel
Strand 3	B	633	634	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	598	606	first strand
Strand 2	B	609	619	anti-parallel
Strand 3	B	636	642	anti-parallel
Strand 4	B	648	657	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XVQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XVQ