Analysis of interatomic Contacts of Structural Units in PDB entry:
8XVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XVY entry

There are 2 chains in PDB entry 8XVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1HIS 696
A
 MET 1HIS 696
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 8XVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
2 28Right-handed alpha
Helix 2
AA2
B
29 32Right-handed 310
Helix 3
AA3
B
33 38Right-handed alpha
Helix 4
AA4
B
56 60Right-handed 310
Helix 5
AA5
B
61 67Right-handed alpha
Helix 6
AA6
B
69 77Right-handed alpha
Helix 7
AA7
B
78 113Right-handed alpha
Helix 8
AA8
B
132 137Right-handed alpha
Helix 9
AA9
B
138 142Right-handed 310
Helix 10
AB1
B
147 183Right-handed alpha
Helix 11
AB2
B
188 191Right-handed 310
Helix 12
AB3
B
207 213Right-handed alpha
Helix 13
AB4
B
215 220Right-handed alpha
Helix 14
AB5
B
233 261Right-handed alpha
Helix 15
AB6
B
280 304Right-handed alpha
Helix 16
AB7
B
317 327Right-handed alpha
Helix 17
AB8
B
355 389Right-handed alpha
Helix 18
AB9
B
389 396Right-handed alpha
Helix 19
AC1
B
397 401Right-handed 310
Helix 20
AC2
B
406 439Right-handed alpha
Helix 21
AC3
B
444 476Right-handed alpha
Helix 22
AC4
B
477 481Right-handed 310
Helix 23
AC5
B
485 523Right-handed alpha
Helix 24
AC6
B
523 530Right-handed alpha
Helix 25
AC7
B
543 547Right-handed 310
Helix 26
AC8
B
554 572Right-handed alpha
Helix 27
AC9
B
578 601Right-handed alpha
Helix 28
AD1
B
612 635Right-handed alpha
Helix 29
AD2
B
642 645Right-handed 310
Helix 30
AD3
B
646 664Right-handed alpha
Helix 31
AD4
B
665 668Right-handed 310
Helix 32
AD5
A
2 29Right-handed alpha
Helix 33
AD6
A
30 32Right-handed 310
Helix 34
AD7
A
33 38Right-handed alpha
Helix 35
AD8
A
61 67Right-handed alpha
Helix 36
AD9
A
69 77Right-handed alpha
Helix 37
AE1
A
78 113Right-handed alpha
Helix 38
AE2
A
132 137Right-handed 310
Helix 39
AE3
A
147 185Right-handed alpha
Helix 40
AE4
A
188 191Right-handed 310
Helix 41
AE5
A
207 213Right-handed alpha
Helix 42
AE6
A
215 220Right-handed alpha
Helix 43
AE7
A
233 261Right-handed alpha
Helix 44
AE8
A
279 303Right-handed alpha
Helix 45
AE9
A
317 324Right-handed alpha
Helix 46
AF1
A
355 388Right-handed alpha
Helix 47
AF2
A
388 394Right-handed alpha
Helix 48
AF3
A
406 438Right-handed alpha
Helix 49
AF4
A
439 441Right-handed 310
Helix 50
AF5
A
444 476Right-handed alpha
Helix 51
AF6
A
491 523Right-handed alpha
Helix 52
AF7
A
523 530Right-handed alpha
Helix 53
AF8
A
543 548Right-handed alpha
Helix 54
AF9
A
554 572Right-handed alpha
Helix 55
AG1
A
578 601Right-handed alpha
Helix 56
AG2
A
612 638Right-handed alpha
Helix 57
AG3
A
642 644Right-handed 310
Helix 58
AG4
A
645 665Right-handed alpha
Helix 59
AG5
A
666 669Right-handed 310
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There are 3 sheets in PDB entry 8XVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 229first strand
Strand 2
B
310 315anti-parallel
Strand 3
B
193 197anti-parallel
Strand 4
B
337 340anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 268first strand
Strand 2
B
276 279anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 231first strand
Strand 2
A
307 315anti-parallel
Strand 3
A
193 197anti-parallel
Strand 4
A
337 340anti-parallel
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