Analysis of interatomic Contacts of Structural Units in PDB entry:
8XW8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XW8 entry

There are 4 chains in PDB entry 8XW8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 501
B	MET 1	ARG 501
C	MET 1	ARG 501
D	MET 1	ARG 501

There are 87 helices in PDB entry 8XW8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	16	Right-handed 310
Helix 2	AA2	A	27	31	Right-handed 310
Helix 3	AA3	A	34	48	Right-handed alpha
Helix 4	AA4	A	61	80	Right-handed alpha
Helix 5	AA5	A	135	137	Right-handed 310
Helix 6	AA6	A	139	143	Right-handed 310
Helix 7	AA7	A	199	213	Right-handed alpha
Helix 8	AA8	A	224	238	Right-handed alpha
Helix 9	AA9	A	251	257	Right-handed alpha
Helix 10	AB1	A	257	265	Right-handed alpha
Helix 11	AB2	A	272	279	Right-handed alpha
Helix 12	AB3	A	280	282	Right-handed 310
Helix 13	AB4	A	283	298	Right-handed alpha
Helix 14	AB5	A	309	314	Right-handed 310
Helix 15	AB6	A	319	333	Right-handed alpha
Helix 16	AB7	A	340	345	Right-handed alpha
Helix 17	AB8	A	348	365	Right-handed alpha
Helix 18	AB9	A	366	371	Right-handed alpha
Helix 19	AC1	A	374	378	Right-handed 310
Helix 20	AC2	A	382	398	Right-handed alpha
Helix 21	AC3	A	410	419	Right-handed alpha
Helix 22	AC4	A	431	438	Right-handed alpha
Helix 23	AC5	A	457	469	Right-handed alpha
Helix 24	AC6	B	12	16	Right-handed 310
Helix 25	AC7	B	27	31	Right-handed 310
Helix 26	AC8	B	34	49	Right-handed alpha
Helix 27	AC9	B	61	80	Right-handed alpha
Helix 28	AD1	B	99	103	Right-handed 310
Helix 29	AD2	B	135	137	Right-handed 310
Helix 30	AD3	B	139	143	Right-handed 310
Helix 31	AD4	B	199	213	Right-handed alpha
Helix 32	AD5	B	224	238	Right-handed alpha
Helix 33	AD6	B	251	257	Right-handed alpha
Helix 34	AD7	B	257	265	Right-handed alpha
Helix 35	AD8	B	272	279	Right-handed alpha
Helix 36	AD9	B	280	282	Right-handed 310
Helix 37	AE1	B	283	298	Right-handed alpha
Helix 38	AE2	B	309	314	Right-handed 310
Helix 39	AE3	B	319	333	Right-handed alpha
Helix 40	AE4	B	340	345	Right-handed alpha
Helix 41	AE5	B	348	365	Right-handed alpha
Helix 42	AE6	B	366	371	Right-handed alpha
Helix 43	AE7	B	374	378	Right-handed 310
Helix 44	AE8	B	382	398	Right-handed alpha
Helix 45	AE9	B	410	419	Right-handed alpha
Helix 46	AF1	B	431	438	Right-handed alpha
Helix 47	AF2	B	457	469	Right-handed alpha
Helix 48	AF3	C	12	16	Right-handed 310
Helix 49	AF4	C	34	49	Right-handed alpha
Helix 50	AF5	C	61	80	Right-handed alpha
Helix 51	AF6	C	199	213	Right-handed alpha
Helix 52	AF7	C	224	238	Right-handed alpha
Helix 53	AF8	C	251	257	Right-handed alpha
Helix 54	AF9	C	257	265	Right-handed alpha
Helix 55	AG1	C	272	279	Right-handed alpha
Helix 56	AG2	C	280	282	Right-handed 310
Helix 57	AG3	C	283	298	Right-handed alpha
Helix 58	AG4	C	309	314	Right-handed 310
Helix 59	AG5	C	319	333	Right-handed alpha
Helix 60	AG6	C	340	345	Right-handed alpha
Helix 61	AG7	C	348	365	Right-handed alpha
Helix 62	AG8	C	366	371	Right-handed alpha
Helix 63	AG9	C	374	378	Right-handed 310
Helix 64	AH1	C	382	398	Right-handed alpha
Helix 65	AH2	C	410	419	Right-handed alpha
Helix 66	AH3	C	431	438	Right-handed alpha
Helix 67	AH4	C	457	469	Right-handed alpha
Helix 68	AH5	D	12	16	Right-handed 310
Helix 69	AH6	D	34	49	Right-handed alpha
Helix 70	AH7	D	61	80	Right-handed alpha
Helix 71	AH8	D	199	213	Right-handed alpha
Helix 72	AH9	D	224	238	Right-handed alpha
Helix 73	AI1	D	251	257	Right-handed alpha
Helix 74	AI2	D	257	265	Right-handed alpha
Helix 75	AI3	D	272	279	Right-handed alpha
Helix 76	AI4	D	280	282	Right-handed 310
Helix 77	AI5	D	283	298	Right-handed alpha
Helix 78	AI6	D	309	314	Right-handed 310
Helix 79	AI7	D	319	333	Right-handed alpha
Helix 80	AI8	D	340	345	Right-handed alpha
Helix 81	AI9	D	348	365	Right-handed alpha
Helix 82	AJ1	D	366	371	Right-handed alpha
Helix 83	AJ2	D	374	378	Right-handed 310
Helix 84	AJ3	D	382	398	Right-handed alpha
Helix 85	AJ4	D	410	419	Right-handed alpha
Helix 86	AJ5	D	431	438	Right-handed alpha
Helix 87	AJ6	D	457	469	Right-handed alpha

There are 14 sheets in PDB entry 8XW8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	10	first strand
Strand 2	A	52	56	parallel
Strand 3	A	84	88	parallel
Strand 4	A	216	219	parallel
Strand 5	A	244	249	parallel
Strand 6	A	267	271	parallel
Strand 7	A	301	305	parallel
Strand 8	A	336	339	parallel
Strand 9	A	6	10	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	113	117	parallel
Strand 3	A	169	174	anti-parallel
Strand 4	A	156	164	anti-parallel
Strand 5	A	148	151	anti-parallel
Strand 6	A	185	187	anti-parallel
Strand 7	A	94	96	anti-parallel
Strand 8	A	131	133	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	108	first strand
Strand 2	A	178	181	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	448	first strand
Strand 2	A	424	429	parallel
Strand 3	A	402	406	parallel
Strand 4	A	477	482	parallel
Strand 5	A	494	499	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	10	first strand
Strand 2	B	52	56	parallel
Strand 3	B	84	88	parallel
Strand 4	B	216	219	parallel
Strand 5	B	244	249	parallel
Strand 6	B	267	271	parallel
Strand 7	B	301	305	parallel
Strand 8	B	336	339	parallel
Strand 9	B	6	10	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	113	117	parallel
Strand 3	B	169	174	anti-parallel
Strand 4	B	156	164	anti-parallel
Strand 5	B	148	151	anti-parallel
Strand 6	B	185	187	anti-parallel
Strand 7	B	94	96	anti-parallel
Strand 8	B	131	133	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	108	first strand
Strand 2	B	178	181	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	448	first strand
Strand 2	B	424	429	parallel
Strand 3	B	402	406	parallel
Strand 4	B	477	482	parallel
Strand 5	B	494	499	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	10	first strand
Strand 2	C	50	56	parallel
Strand 3	C	84	88	parallel
Strand 4	C	216	219	parallel
Strand 5	C	244	249	parallel
Strand 6	C	267	271	parallel
Strand 7	C	301	305	parallel
Strand 8	C	336	339	parallel
Strand 9	C	6	10	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	96	first strand
Strand 2	C	128	133	anti-parallel
Strand 3	C	113	117	parallel
Strand 4	C	169	174	anti-parallel
Strand 5	C	156	164	anti-parallel
Strand 6	C	148	151	anti-parallel
Strand 7	C	186	187	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	444	448	first strand
Strand 2	C	424	429	parallel
Strand 3	C	402	406	parallel
Strand 4	C	477	482	parallel
Strand 5	C	494	499	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	10	first strand
Strand 2	D	50	56	parallel
Strand 3	D	84	88	parallel
Strand 4	D	216	219	parallel
Strand 5	D	244	249	parallel
Strand 6	D	267	271	parallel
Strand 7	D	301	305	parallel
Strand 8	D	336	339	parallel
Strand 9	D	6	10	parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	96	first strand
Strand 2	D	128	133	anti-parallel
Strand 3	D	113	117	parallel
Strand 4	D	169	174	anti-parallel
Strand 5	D	156	164	anti-parallel
Strand 6	D	148	151	anti-parallel
Strand 7	D	185	187	anti-parallel
Strand 8	D	94	96	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	444	448	first strand
Strand 2	D	424	429	parallel
Strand 3	D	402	406	parallel
Strand 4	D	477	482	parallel
Strand 5	D	494	499	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XW8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XW8