Analysis of interatomic Contacts of Structural Units in PDB entry:
8XW9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XW9 entry

There are 2 chains in PDB entry 8XW9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 501
B
 MET 1ARG 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8XW9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
27 31Right-handed 310
Helix 3
AA3
A
35 48Right-handed alpha
Helix 4
AA4
A
61 80Right-handed alpha
Helix 5
AA5
A
99 103Right-handed 310
Helix 6
AA6
A
135 137Right-handed 310
Helix 7
AA7
A
139 143Right-handed 310
Helix 8
AA8
A
199 213Right-handed alpha
Helix 9
AA9
A
224 238Right-handed alpha
Helix 10
AB1
A
251 257Right-handed alpha
Helix 11
AB2
A
257 265Right-handed alpha
Helix 12
AB3
A
272 279Right-handed alpha
Helix 13
AB4
A
280 282Right-handed 310
Helix 14
AB5
A
283 298Right-handed alpha
Helix 15
AB6
A
309 314Right-handed 310
Helix 16
AB7
A
319 333Right-handed alpha
Helix 17
AB8
A
340 345Right-handed alpha
Helix 18
AB9
A
348 365Right-handed alpha
Helix 19
AC1
A
366 371Right-handed alpha
Helix 20
AC2
A
374 378Right-handed 310
Helix 21
AC3
A
382 398Right-handed alpha
Helix 22
AC4
A
410 419Right-handed alpha
Helix 23
AC5
A
431 438Right-handed alpha
Helix 24
AC6
A
457 469Right-handed alpha
Helix 25
AC7
B
12 16Right-handed 310
Helix 26
AC8
B
27 31Right-handed 310
Helix 27
AC9
B
35 49Right-handed alpha
Helix 28
AD1
B
61 80Right-handed alpha
Helix 29
AD2
B
135 137Right-handed 310
Helix 30
AD3
B
139 143Right-handed 310
Helix 31
AD4
B
199 213Right-handed alpha
Helix 32
AD5
B
224 238Right-handed alpha
Helix 33
AD6
B
251 257Right-handed alpha
Helix 34
AD7
B
257 265Right-handed alpha
Helix 35
AD8
B
272 279Right-handed alpha
Helix 36
AD9
B
280 282Right-handed 310
Helix 37
AE1
B
283 298Right-handed alpha
Helix 38
AE2
B
309 314Right-handed 310
Helix 39
AE3
B
319 333Right-handed alpha
Helix 40
AE4
B
340 345Right-handed alpha
Helix 41
AE5
B
348 365Right-handed alpha
Helix 42
AE6
B
366 371Right-handed alpha
Helix 43
AE7
B
374 378Right-handed 310
Helix 44
AE8
B
382 398Right-handed alpha
Helix 45
AE9
B
410 419Right-handed alpha
Helix 46
AF1
B
431 438Right-handed alpha
Helix 47
AF2
B
457 469Right-handed alpha
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There are 10 sheets in PDB entry 8XW9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
50 56parallel
Strand 3
A
84 88parallel
Strand 4
A
216 219parallel
Strand 5
A
244 249parallel
Strand 6
A
267 271parallel
Strand 7
A
301 305parallel
Strand 8
A
336 339parallel
Strand 9
A
6 10parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
33 34anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
128 133anti-parallel
Strand 3
A
113 117parallel
Strand 4
A
169 174anti-parallel
Strand 5
A
156 164anti-parallel
Strand 6
A
148 151anti-parallel
Strand 7
A
185 187anti-parallel
Strand 8
A
94 96anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 108first strand
Strand 2
A
178 181anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 448first strand
Strand 2
A
424 429parallel
Strand 3
A
402 406parallel
Strand 4
A
477 482parallel
Strand 5
A
494 499anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
50 56parallel
Strand 3
B
84 88parallel
Strand 4
B
216 219parallel
Strand 5
B
244 249parallel
Strand 6
B
267 271parallel
Strand 7
B
301 305parallel
Strand 8
B
336 339parallel
Strand 9
B
6 10parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
33 34anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 96first strand
Strand 2
B
128 133anti-parallel
Strand 3
B
113 117parallel
Strand 4
B
169 174anti-parallel
Strand 5
B
156 163anti-parallel
Strand 6
B
148 151anti-parallel
Strand 7
B
185 187anti-parallel
Strand 8
B
94 96anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 108first strand
Strand 2
B
178 181anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 448first strand
Strand 2
B
424 429parallel
Strand 3
B
402 406parallel
Strand 4
B
477 482parallel
Strand 5
B
494 499anti-parallel
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