Analysis of interatomic Contacts of Structural Units in PDB entry:
8XWF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XWF entry

There are 3 chains in PDB entry 8XWF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 GLY 17LYS 69
D
 ALA 1LEU 67
R
 LEU 33ALA 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8XWF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
19 21Right-handed 310
Helix 2
AA2
E
56 69Right-handed alpha
Helix 3
AA3
D
56 67Right-handed alpha
Helix 4
AA4
R
44 76Right-handed alpha
Helix 5
AA5
R
81 111Right-handed alpha
Helix 6
AA6
R
116 149Right-handed alpha
Helix 7
AA7
R
154 160Right-handed 310
Helix 8
AA8
R
161 177Right-handed alpha
Helix 9
AA9
R
177 183Right-handed alpha
Helix 10
AB1
R
203 212Right-handed alpha
Helix 11
AB2
R
212 218Right-handed alpha
Helix 12
AB3
R
220 240Right-handed alpha
Helix 13
AB4
R
245 279Right-handed alpha
Helix 14
AB5
R
285 304Right-handed alpha
Helix 15
AB6
R
304 315Right-handed alpha
Helix 16
AB7
R
318 329Right-handed alpha
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There are 2 sheets in PDB entry 8XWF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
49 52first strand
Strand 2
E
39 44anti-parallel
Strand 3
E
23 29anti-parallel
Strand 4
D
23 29anti-parallel
Strand 5
D
39 44anti-parallel
Strand 6
D
49 52anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
184 187first strand
Strand 2
R
195 198anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il