Analysis of interatomic Contacts of Structural Units in PDB entry:
8XWO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XWO entry

There are 6 chains in PDB entry 8XWO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 20	PHE 350
B	GLU 20	PHE 350
C	GLU 20	PHE 350
D	GLU 20	PHE 350
E	GLU 20	PHE 350
F	GLU 20	PHE 350

There are 33 helices in PDB entry 8XWO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	46	Right-handed alpha
Helix 2	AA2	A	115	127	Right-handed alpha
Helix 3	AA3	A	130	135	Right-handed alpha
Helix 4	AA4	A	159	162	Right-handed 310
Helix 5	AA5	A	174	179	Right-handed 310
Helix 6	AA6	B	38	46	Right-handed alpha
Helix 7	AA7	B	115	123	Right-handed alpha
Helix 8	AA8	B	130	135	Right-handed alpha
Helix 9	AA9	B	159	162	Right-handed 310
Helix 10	AB1	B	174	179	Right-handed 310
Helix 11	AB2	C	38	46	Right-handed alpha
Helix 12	AB3	C	115	123	Right-handed alpha
Helix 13	AB4	C	130	135	Right-handed alpha
Helix 14	AB5	C	159	162	Right-handed 310
Helix 15	AB6	C	175	179	Right-handed 310
Helix 16	AB7	C	332	337	Right-handed 310
Helix 17	AB8	D	38	46	Right-handed alpha
Helix 18	AB9	D	115	123	Right-handed alpha
Helix 19	AC1	D	130	135	Right-handed alpha
Helix 20	AC2	D	159	162	Right-handed 310
Helix 21	AC3	D	175	179	Right-handed 310
Helix 22	AC4	D	332	337	Right-handed 310
Helix 23	AC5	E	38	46	Right-handed alpha
Helix 24	AC6	E	115	123	Right-handed alpha
Helix 25	AC7	E	130	135	Right-handed alpha
Helix 26	AC8	E	159	162	Right-handed 310
Helix 27	AC9	E	175	179	Right-handed 310
Helix 28	AD1	E	332	337	Right-handed 310
Helix 29	AD2	F	38	46	Right-handed alpha
Helix 30	AD3	F	115	123	Right-handed alpha
Helix 31	AD4	F	130	135	Right-handed alpha
Helix 32	AD5	F	159	162	Right-handed 310
Helix 33	AD6	F	174	179	Right-handed 310

There are 12 sheets in PDB entry 8XWO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 15 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	52	first strand
Strand 2	A	21	35	anti-parallel
Strand 3	A	55	63	anti-parallel
Strand 4	A	70	76	anti-parallel
Strand 5	A	96	102	anti-parallel
Strand 6	A	106	113	anti-parallel
Strand 7	A	149	156	anti-parallel
Strand 8	A	164	172	anti-parallel
Strand 9	A	184	192	anti-parallel
Strand 10	A	197	211	anti-parallel
Strand 11	A	214	228	anti-parallel
Strand 12	A	233	246	anti-parallel
Strand 13	A	251	265	anti-parallel
Strand 14	A	280	282	anti-parallel
Strand 15	A	285	287	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	52	first strand
Strand 2	A	21	35	anti-parallel
Strand 3	A	338	349	anti-parallel
Strand 4	A	307	317	anti-parallel
Strand 5	A	292	304	anti-parallel
Strand 6	A	268	277	anti-parallel
Strand 7	A	251	265	anti-parallel
Strand 8	A	280	282	anti-parallel
Strand 9	A	285	287	anti-parallel

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There are 15 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	21	35	anti-parallel
Strand 3	B	55	62	anti-parallel
Strand 4	B	70	76	anti-parallel
Strand 5	B	96	102	anti-parallel
Strand 6	B	106	114	anti-parallel
Strand 7	B	148	156	anti-parallel
Strand 8	B	164	172	anti-parallel
Strand 9	B	184	192	anti-parallel
Strand 10	B	197	211	anti-parallel
Strand 11	B	214	228	anti-parallel
Strand 12	B	233	245	anti-parallel
Strand 13	B	251	265	anti-parallel
Strand 14	B	280	282	anti-parallel
Strand 15	B	285	287	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	21	35	anti-parallel
Strand 3	B	338	349	anti-parallel
Strand 4	B	307	317	anti-parallel
Strand 5	B	292	304	anti-parallel
Strand 6	B	268	277	anti-parallel
Strand 7	B	251	265	anti-parallel
Strand 8	B	280	282	anti-parallel
Strand 9	B	285	287	anti-parallel

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There are 15 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	52	first strand
Strand 2	C	21	35	anti-parallel
Strand 3	C	55	62	anti-parallel
Strand 4	C	70	76	anti-parallel
Strand 5	C	94	102	anti-parallel
Strand 6	C	106	114	anti-parallel
Strand 7	C	148	156	anti-parallel
Strand 8	C	164	172	anti-parallel
Strand 9	C	184	192	anti-parallel
Strand 10	C	197	211	anti-parallel
Strand 11	C	214	228	anti-parallel
Strand 12	C	233	246	anti-parallel
Strand 13	C	251	265	anti-parallel
Strand 14	C	281	282	anti-parallel
Strand 15	C	285	286	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	52	first strand
Strand 2	C	21	35	anti-parallel
Strand 3	C	338	349	anti-parallel
Strand 4	C	307	317	anti-parallel
Strand 5	C	292	304	anti-parallel
Strand 6	C	268	277	anti-parallel
Strand 7	C	251	265	anti-parallel
Strand 8	C	281	282	anti-parallel
Strand 9	C	285	286	anti-parallel

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There are 17 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	52	first strand
Strand 2	D	24	35	anti-parallel
Strand 3	D	338	349	anti-parallel
Strand 4	D	307	317	anti-parallel
Strand 5	D	292	304	anti-parallel
Strand 6	D	268	277	anti-parallel
Strand 7	D	251	265	anti-parallel
Strand 8	D	234	245	anti-parallel
Strand 9	D	214	228	anti-parallel
Strand 10	D	197	211	anti-parallel
Strand 11	D	184	192	anti-parallel
Strand 12	D	164	172	anti-parallel
Strand 13	D	149	156	anti-parallel
Strand 14	D	106	113	anti-parallel
Strand 15	D	91	102	anti-parallel
Strand 16	D	70	77	anti-parallel
Strand 17	D	57	62	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	52	first strand
Strand 2	D	24	35	anti-parallel
Strand 3	D	338	349	anti-parallel
Strand 4	D	307	317	anti-parallel
Strand 5	D	292	304	anti-parallel
Strand 6	D	268	277	anti-parallel
Strand 7	D	251	265	anti-parallel
Strand 8	D	281	282	anti-parallel
Strand 9	D	285	286	anti-parallel

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There are 15 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	52	first strand
Strand 2	E	21	35	anti-parallel
Strand 3	E	55	62	anti-parallel
Strand 4	E	70	76	anti-parallel
Strand 5	E	94	102	anti-parallel
Strand 6	E	106	114	anti-parallel
Strand 7	E	148	156	anti-parallel
Strand 8	E	164	172	anti-parallel
Strand 9	E	184	192	anti-parallel
Strand 10	E	197	211	anti-parallel
Strand 11	E	214	228	anti-parallel
Strand 12	E	233	246	anti-parallel
Strand 13	E	251	265	anti-parallel
Strand 14	E	281	282	anti-parallel
Strand 15	E	285	286	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	52	first strand
Strand 2	E	21	35	anti-parallel
Strand 3	E	338	349	anti-parallel
Strand 4	E	307	317	anti-parallel
Strand 5	E	292	304	anti-parallel
Strand 6	E	268	277	anti-parallel
Strand 7	E	251	265	anti-parallel
Strand 8	E	281	282	anti-parallel
Strand 9	E	285	286	anti-parallel

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There are 15 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	52	first strand
Strand 2	F	21	35	anti-parallel
Strand 3	F	55	62	anti-parallel
Strand 4	F	70	76	anti-parallel
Strand 5	F	96	102	anti-parallel
Strand 6	F	106	112	anti-parallel
Strand 7	F	152	156	anti-parallel
Strand 8	F	164	172	anti-parallel
Strand 9	F	184	194	anti-parallel
Strand 10	F	197	211	anti-parallel
Strand 11	F	214	228	anti-parallel
Strand 12	F	233	246	anti-parallel
Strand 13	F	251	265	anti-parallel
Strand 14	F	280	282	anti-parallel
Strand 15	F	285	287	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	52	first strand
Strand 2	F	21	35	anti-parallel
Strand 3	F	338	349	anti-parallel
Strand 4	F	307	317	anti-parallel
Strand 5	F	292	304	anti-parallel
Strand 6	F	268	277	anti-parallel
Strand 7	F	251	265	anti-parallel
Strand 8	F	280	282	anti-parallel
Strand 9	F	285	287	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XWO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XWO