Analysis of interatomic Contacts of Structural Units in PDB entry:
8XWP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XWP entry

There are 6 chains in PDB entry 8XWP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	PRO 88	SER 399
L	CYS 1	TRP 21
A	THR 4	PHE 354
B	GLU 3	ASN 340
C	ILE 9	PHE 61
D	VAL 2	LEU 235

There are 25 helices in PDB entry 8XWP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	97	129	Right-handed alpha
Helix 2	AA2	R	134	161	Right-handed alpha
Helix 3	AA3	R	170	205	Right-handed alpha
Helix 4	AA4	R	217	238	Right-handed alpha
Helix 5	AA5	R	263	272	Right-handed alpha
Helix 6	AA6	R	272	282	Right-handed alpha
Helix 7	AA7	R	282	301	Right-handed alpha
Helix 8	AA8	R	313	349	Right-handed alpha
Helix 9	AA9	R	356	388	Right-handed alpha
Helix 10	AB1	R	390	399	Right-handed alpha
Helix 11	AB2	L	10	18	Right-handed alpha
Helix 12	AB3	A	6	32	Right-handed alpha
Helix 13	AB4	A	45	53	Right-handed alpha
Helix 14	AB5	A	228	230	Right-handed 310
Helix 15	AB6	A	242	255	Right-handed alpha
Helix 16	AB7	A	270	281	Right-handed alpha
Helix 17	AB8	A	295	309	Right-handed alpha
Helix 18	AB9	A	329	351	Right-handed alpha
Helix 19	AC1	B	4	26	Right-handed alpha
Helix 20	AC2	B	30	35	Right-handed alpha
Helix 21	AC3	C	10	24	Right-handed alpha
Helix 22	AC4	C	29	44	Right-handed alpha
Helix 23	AC5	C	45	48	Right-handed 310
Helix 24	AC6	D	28	32	Right-handed 310
Helix 25	AC7	D	74	76	Right-handed 310

There are 14 sheets in PDB entry 8XWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	240	243	first strand
Strand 2	R	254	257	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	246	247	first strand
Strand 2	R	250	251	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	188	first strand
Strand 2	A	197	200	anti-parallel
Strand 3	A	35	40	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	320	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	165	168	anti-parallel
Strand 4	B	178	181	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	252	254	anti-parallel
Strand 4	B	259	262	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	286	289	anti-parallel
Strand 3	B	294	296	anti-parallel
Strand 4	B	307	308	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	17	25	anti-parallel
Strand 3	D	78	84	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	45	51	anti-parallel
Strand 3	D	33	39	anti-parallel
Strand 4	D	93	99	anti-parallel
Strand 5	D	110	111	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	143	149	anti-parallel
Strand 3	D	199	204	anti-parallel
Strand 4	D	194	196	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	136	first strand
Strand 2	D	231	234	parallel
Strand 3	D	214	219	anti-parallel
Strand 4	D	162	167	anti-parallel
Strand 5	D	174	178	anti-parallel
Strand 6	D	182	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XWP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XWP