Analysis of interatomic Contacts of Structural Units in PDB entry:
8XWS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XWS entry

There are 4 chains in PDB entry 8XWS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 GLU 10GLY 74
R
 PRO 31ALA 330
B
 GLU 10GLY 74
C
 PRO 31ALA 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8XWS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
23 25Right-handed 310
Helix 2
AA2
D
60 71Right-handed alpha
Helix 3
AA3
R
31 36Right-handed 310
Helix 4
AA4
R
44 76Right-handed alpha
Helix 5
AA5
R
81 111Right-handed alpha
Helix 6
AA6
R
115 149Right-handed alpha
Helix 7
AA7
R
154 160Right-handed 310
Helix 8
AA8
R
161 177Right-handed alpha
Helix 9
AA9
R
177 183Right-handed alpha
Helix 10
AB1
R
203 212Right-handed alpha
Helix 11
AB2
R
212 218Right-handed alpha
Helix 12
AB3
R
220 240Right-handed alpha
Helix 13
AB4
R
245 279Right-handed alpha
Helix 14
AB5
R
285 304Right-handed alpha
Helix 15
AB6
R
305 315Right-handed alpha
Helix 16
AB7
R
318 329Right-handed alpha
Helix 17
AB8
B
23 25Right-handed 310
Helix 18
AB9
B
60 71Right-handed alpha
Helix 19
AC1
C
31 36Right-handed 310
Helix 20
AC2
C
44 76Right-handed alpha
Helix 21
AC3
C
81 111Right-handed alpha
Helix 22
AC4
C
115 149Right-handed alpha
Helix 23
AC5
C
154 160Right-handed 310
Helix 24
AC6
C
161 177Right-handed alpha
Helix 25
AC7
C
177 183Right-handed alpha
Helix 26
AC8
C
203 212Right-handed alpha
Helix 27
AC9
C
212 218Right-handed alpha
Helix 28
AD1
C
220 240Right-handed alpha
Helix 29
AD2
C
245 279Right-handed alpha
Helix 30
AD3
C
285 304Right-handed alpha
Helix 31
AD4
C
305 315Right-handed alpha
Helix 32
AD5
C
318 329Right-handed alpha
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There are 3 sheets in PDB entry 8XWS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 56first strand
Strand 2
D
43 48anti-parallel
Strand 3
D
27 33anti-parallel
Strand 4
B
27 33anti-parallel
Strand 5
B
43 48anti-parallel
Strand 6
B
53 56anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
184 187first strand
Strand 2
R
195 198anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
184 187first strand
Strand 2
C
195 198anti-parallel
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