Analysis of interatomic Contacts of Structural Units in PDB entry:
8XWY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XWY entry

There are 4 chains in PDB entry 8XWY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 30PRO 233
B
 VAL 33SER 226
C
 PRO 31GLY 228
D
 PRO 36TRP 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 8XWY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 73Right-handed alpha
Helix 2
AA2
A
94 100Right-handed alpha
Helix 3
AA3
A
101 113Right-handed alpha
Helix 4
AA4
A
115 127Right-handed alpha
Helix 5
AA5
A
130 158Right-handed alpha
Helix 6
AA6
A
197 226Right-handed alpha
Helix 7
AA7
D
39 73Right-handed alpha
Helix 8
AA8
D
77 81Right-handed 310
Helix 9
AA9
D
94 98Right-handed alpha
Helix 10
AB1
D
101 114Right-handed alpha
Helix 11
AB2
D
115 124Right-handed alpha
Helix 12
AB3
D
130 158Right-handed alpha
Helix 13
AB4
D
196 226Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 8XWY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
B
95 96anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
43 47anti-parallel
Strand 3
B
88 92anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 78first strand
Strand 2
B
65 68anti-parallel
Strand 3
B
102 105anti-parallel
Strand 4
B
118 121anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 139first strand
Strand 2
B
144 150anti-parallel
Strand 3
B
187 191anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 183first strand
Strand 2
B
163 171anti-parallel
Strand 3
B
198 207anti-parallel
Strand 4
B
221 224anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 36first strand
Strand 2
C
43 47anti-parallel
Strand 3
C
88 92anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 78first strand
Strand 2
C
65 68anti-parallel
Strand 3
C
102 105anti-parallel
Strand 4
C
120 121anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 96first strand
Strand 2
D
92 93anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 139first strand
Strand 2
C
144 150anti-parallel
Strand 3
C
187 191anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
178 183first strand
Strand 2
C
163 170anti-parallel
Strand 3
C
198 207anti-parallel
Strand 4
C
221 224anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il