Analysis of interatomic Contacts of Structural Units in PDB entry:
8XX7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XX7 entry

There are 10 chains in PDB entry 8XX7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLU 10	GLY 74
R	PRO 31	ALA 330
B	GLU 10	GLY 74
C	PRO 31	ALA 330
A	THR 4	TYR 354
E	ASP 5	ASN 340
G	ILE 9	PHE 61
F	THR 4	TYR 354
H	ASP 5	ASN 340
I	ILE 9	PHE 61

There are 54 helices in PDB entry 8XX7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	23	25	Right-handed 310
Helix 2	AA2	D	60	71	Right-handed alpha
Helix 3	AA3	R	31	36	Right-handed 310
Helix 4	AA4	R	44	76	Right-handed alpha
Helix 5	AA5	R	81	111	Right-handed alpha
Helix 6	AA6	R	115	149	Right-handed alpha
Helix 7	AA7	R	154	160	Right-handed 310
Helix 8	AA8	R	161	177	Right-handed alpha
Helix 9	AA9	R	177	183	Right-handed alpha
Helix 10	AB1	R	203	212	Right-handed alpha
Helix 11	AB2	R	212	218	Right-handed alpha
Helix 12	AB3	R	220	240	Right-handed alpha
Helix 13	AB4	R	245	279	Right-handed alpha
Helix 14	AB5	R	285	304	Right-handed alpha
Helix 15	AB6	R	305	315	Right-handed alpha
Helix 16	AB7	R	318	329	Right-handed alpha
Helix 17	AB8	B	23	25	Right-handed 310
Helix 18	AB9	B	60	71	Right-handed alpha
Helix 19	AC1	C	31	36	Right-handed 310
Helix 20	AC2	C	44	76	Right-handed alpha
Helix 21	AC3	C	81	111	Right-handed alpha
Helix 22	AC4	C	115	149	Right-handed alpha
Helix 23	AC5	C	154	160	Right-handed 310
Helix 24	AC6	C	161	177	Right-handed alpha
Helix 25	AC7	C	177	183	Right-handed alpha
Helix 26	AC8	C	203	212	Right-handed alpha
Helix 27	AC9	C	212	218	Right-handed alpha
Helix 28	AD1	C	220	240	Right-handed alpha
Helix 29	AD2	C	245	279	Right-handed alpha
Helix 30	AD3	C	285	304	Right-handed alpha
Helix 31	AD4	C	305	315	Right-handed alpha
Helix 32	AD5	C	318	329	Right-handed alpha
Helix 33	AD6	A	6	30	Right-handed alpha
Helix 34	AD7	A	208	217	Right-handed 310
Helix 35	AD8	A	243	256	Right-handed alpha
Helix 36	AD9	A	271	282	Right-handed alpha
Helix 37	AE1	A	296	310	Right-handed alpha
Helix 38	AE2	A	330	351	Right-handed alpha
Helix 39	AE3	E	6	26	Right-handed alpha
Helix 40	AE4	E	29	34	Right-handed alpha
Helix 41	AE5	G	12	24	Right-handed alpha
Helix 42	AE6	G	29	44	Right-handed alpha
Helix 43	AE7	G	55	59	Right-handed 310
Helix 44	AE8	F	6	30	Right-handed alpha
Helix 45	AE9	F	208	217	Right-handed 310
Helix 46	AF1	F	243	256	Right-handed alpha
Helix 47	AF2	F	271	282	Right-handed alpha
Helix 48	AF3	F	296	310	Right-handed alpha
Helix 49	AF4	F	330	351	Right-handed alpha
Helix 50	AF5	H	6	26	Right-handed alpha
Helix 51	AF6	H	29	34	Right-handed alpha
Helix 52	AF7	I	12	24	Right-handed alpha
Helix 53	AF8	I	29	44	Right-handed alpha
Helix 54	AF9	I	55	59	Right-handed 310

There are 21 sheets in PDB entry 8XX7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	43	48	anti-parallel
Strand 3	D	27	33	anti-parallel
Strand 4	B	27	33	anti-parallel
Strand 5	B	43	48	anti-parallel
Strand 6	B	53	56	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	184	187	first strand
Strand 2	R	195	198	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	187	first strand
Strand 2	C	195	198	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	188	first strand
Strand 2	A	195	201	anti-parallel
Strand 3	A	191	192	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	188	first strand
Strand 2	A	195	201	anti-parallel
Strand 3	A	33	40	parallel
Strand 4	A	221	227	parallel
Strand 5	A	265	270	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	52	first strand
Strand 2	E	335	339	anti-parallel
Strand 3	E	327	331	anti-parallel
Strand 4	E	315	320	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	63	first strand
Strand 2	E	69	74	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	88	94	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	103	first strand
Strand 2	E	111	116	anti-parallel
Strand 3	E	121	125	anti-parallel
Strand 4	E	134	139	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	153	first strand
Strand 2	E	156	161	anti-parallel
Strand 3	E	165	169	anti-parallel
Strand 4	E	176	181	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	192	first strand
Strand 2	E	198	203	anti-parallel
Strand 3	E	207	212	anti-parallel
Strand 4	E	218	223	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	229	234	first strand
Strand 2	E	240	245	anti-parallel
Strand 3	E	250	254	anti-parallel
Strand 4	E	260	263	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	273	278	first strand
Strand 2	E	284	289	anti-parallel
Strand 3	E	294	298	anti-parallel
Strand 4	E	304	307	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	186	188	first strand
Strand 2	F	195	201	anti-parallel
Strand 3	F	191	192	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	186	188	first strand
Strand 2	F	195	201	anti-parallel
Strand 3	F	33	40	parallel
Strand 4	F	221	227	parallel
Strand 5	F	265	270	parallel
Strand 6	F	319	323	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	47	52	first strand
Strand 2	H	335	339	anti-parallel
Strand 3	H	327	331	anti-parallel
Strand 4	H	315	320	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	63	first strand
Strand 2	H	69	74	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	88	94	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	103	first strand
Strand 2	H	111	116	anti-parallel
Strand 3	H	121	125	anti-parallel
Strand 4	H	134	139	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	153	first strand
Strand 2	H	156	161	anti-parallel
Strand 3	H	165	169	anti-parallel
Strand 4	H	176	181	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	187	192	first strand
Strand 2	H	198	203	anti-parallel
Strand 3	H	207	212	anti-parallel
Strand 4	H	218	223	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	229	234	first strand
Strand 2	H	240	245	anti-parallel
Strand 3	H	250	254	anti-parallel
Strand 4	H	260	263	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	273	278	first strand
Strand 2	H	284	289	anti-parallel
Strand 3	H	294	298	anti-parallel
Strand 4	H	304	307	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XX7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XX7