Analysis of interatomic Contacts of Structural Units in PDB entry:
8XX9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XX9 entry

There is 1 chain in PDB entry 8XX9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 267GLU 886
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8XX9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
299 301Right-handed 310
Helix 2
AA2
A
305 309Right-handed 310
Helix 3
AA3
A
360 364Right-handed 310
Helix 4
AA4
A
405 408Right-handed 310
Helix 5
AA5
A
415 420Right-handed alpha
Helix 6
AA6
A
424 430Right-handed alpha
Helix 7
AA7
A
431 439Right-handed alpha
Helix 8
AA8
A
468 472Right-handed 310
Helix 9
AA9
A
473 487Right-handed alpha
Helix 10
AB1
A
504 509Right-handed alpha
Helix 11
AB2
A
537 556Right-handed alpha
Helix 12
AB3
A
564 568Right-handed 310
Helix 13
AB4
A
576 582Right-handed alpha
Helix 14
AB5
A
584 602Right-handed alpha
Helix 15
AB6
A
614 624Right-handed alpha
Helix 16
AB7
A
639 649Right-handed alpha
Helix 17
AB8
A
660 669Right-handed 310
Helix 18
AB9
A
686 695Right-handed alpha
Helix 19
AC1
A
705 719Right-handed alpha
Helix 20
AC2
A
732 736Right-handed 310
Helix 21
AC3
A
768 773Right-handed 310
Helix 22
AC4
A
774 794Right-handed alpha
Helix 23
AC5
A
795 798Right-handed 310
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There are 8 sheets in PDB entry 8XX9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 274first strand
Strand 2
A
277 286anti-parallel
Strand 3
A
321 326anti-parallel
Strand 4
A
311 313anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 297first strand
Strand 2
A
335 341anti-parallel
Strand 3
A
345 347anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 297first strand
Strand 2
A
335 341anti-parallel
Strand 3
A
384 387anti-parallel
Strand 4
A
355 356anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 414first strand
Strand 2
A
442 445parallel
Strand 3
A
490 495parallel
Strand 4
A
559 562parallel
Strand 5
A
606 609parallel
Strand 6
A
634 638parallel
Strand 7
A
675 678parallel
Strand 8
A
727 730parallel
Strand 9
A
410 414parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 500first strand
Strand 2
A
531 533anti-parallel
Strand 3
A
519 520anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
697 698first strand
Strand 2
A
701 702anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
803 807first strand
Strand 2
A
814 821anti-parallel
Strand 3
A
824 831anti-parallel
Strand 4
A
874 878anti-parallel
Strand 5
A
847 851anti-parallel
Strand 6
A
857 860anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
837 839first strand
Strand 2
A
867 869anti-parallel
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