Analysis of interatomic Contacts of Structural Units in PDB entry:
8XXE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XXE entry

There are 3 chains in PDB entry 8XXE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 448
B
 MET 1GLU 449
C
 MET 1SER 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 8XXE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 26Right-handed alpha
Helix 2
AA2
A
35 40Right-handed alpha
Helix 3
AA3
A
68 73Right-handed alpha
Helix 4
AA4
A
88 99Right-handed alpha
Helix 5
AA5
A
103 118Right-handed alpha
Helix 6
AA6
A
119 121Right-handed 310
Helix 7
AA7
A
122 132Right-handed alpha
Helix 8
AA8
A
137 149Right-handed alpha
Helix 9
AA9
A
150 152Right-handed 310
Helix 10
AB1
A
153 162Right-handed alpha
Helix 11
AB2
A
164 166Right-handed 310
Helix 12
AB3
A
167 196Right-handed alpha
Helix 13
AB4
A
208 218Right-handed alpha
Helix 14
AB5
A
221 235Right-handed alpha
Helix 15
AB6
A
242 254Right-handed alpha
Helix 16
AB7
A
257 270Right-handed alpha
Helix 17
AB8
A
271 276Right-handed alpha
Helix 18
AB9
A
276 292Right-handed alpha
Helix 19
AC1
A
297 311Right-handed alpha
Helix 20
AC2
A
327 341Right-handed alpha
Helix 21
AC3
A
344 365Right-handed alpha
Helix 22
AC4
A
373 376Right-handed 310
Helix 23
AC5
A
377 385Right-handed alpha
Helix 24
AC6
A
389 391Right-handed 310
Helix 25
AC7
A
392 416Right-handed alpha
Helix 26
AC8
A
426 434Right-handed alpha
Helix 27
AC9
A
442 448Right-handed alpha
Helix 28
AD1
B
2 26Right-handed alpha
Helix 29
AD2
B
35 40Right-handed alpha
Helix 30
AD3
B
67 73Right-handed alpha
Helix 31
AD4
B
88 99Right-handed alpha
Helix 32
AD5
B
103 118Right-handed alpha
Helix 33
AD6
B
122 132Right-handed alpha
Helix 34
AD7
B
137 149Right-handed alpha
Helix 35
AD8
B
150 152Right-handed 310
Helix 36
AD9
B
153 162Right-handed alpha
Helix 37
AE1
B
164 166Right-handed 310
Helix 38
AE2
B
167 196Right-handed alpha
Helix 39
AE3
B
208 218Right-handed alpha
Helix 40
AE4
B
221 235Right-handed alpha
Helix 41
AE5
B
242 254Right-handed alpha
Helix 42
AE6
B
257 270Right-handed alpha
Helix 43
AE7
B
276 292Right-handed alpha
Helix 44
AE8
B
297 311Right-handed alpha
Helix 45
AE9
B
327 341Right-handed alpha
Helix 46
AF1
B
344 365Right-handed alpha
Helix 47
AF2
B
374 385Right-handed alpha
Helix 48
AF3
B
389 391Right-handed 310
Helix 49
AF4
B
392 416Right-handed alpha
Helix 50
AF5
B
426 434Right-handed alpha
Helix 51
AF6
B
442 449Right-handed alpha
Helix 52
AF7
C
2 26Right-handed alpha
Helix 53
AF8
C
34 40Right-handed alpha
Helix 54
AF9
C
68 73Right-handed alpha
Helix 55
AG1
C
88 99Right-handed alpha
Helix 56
AG2
C
103 118Right-handed alpha
Helix 57
AG3
C
122 132Right-handed alpha
Helix 58
AG4
C
137 149Right-handed alpha
Helix 59
AG5
C
150 152Right-handed 310
Helix 60
AG6
C
153 162Right-handed alpha
Helix 61
AG7
C
164 166Right-handed 310
Helix 62
AG8
C
167 196Right-handed alpha
Helix 63
AG9
C
208 218Right-handed alpha
Helix 64
AH1
C
221 235Right-handed alpha
Helix 65
AH2
C
242 253Right-handed alpha
Helix 66
AH3
C
257 270Right-handed alpha
Helix 67
AH4
C
271 276Right-handed alpha
Helix 68
AH5
C
276 293Right-handed alpha
Helix 69
AH6
C
297 311Right-handed alpha
Helix 70
AH7
C
327 341Right-handed alpha
Helix 71
AH8
C
344 365Right-handed alpha
Helix 72
AH9
C
373 376Right-handed 310
Helix 73
AI1
C
377 385Right-handed alpha
Helix 74
AI2
C
389 391Right-handed 310
Helix 75
AI3
C
392 416Right-handed alpha
Helix 76
AI4
C
426 434Right-handed alpha
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There are 6 sheets in PDB entry 8XXE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
B
29 34anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
B
423 425parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
60 63anti-parallel
Strand 3
A
66 67anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 425first strand
Strand 2
B
46 49parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
60 63anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 56first strand
Strand 2
C
60 63anti-parallel
Strand 3
C
66 67anti-parallel
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