Analysis of interatomic Contacts of Structural Units in PDB entry:
8XXQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XXQ entry

There are 4 chains in PDB entry 8XXQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	MET 501
B	SER 3	MET 501
C	SER 3	MET 501
D	SER 3	MET 501

There are 76 helices in PDB entry 8XXQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	64	Right-handed alpha
Helix 2	AA2	A	65	83	Right-handed alpha
Helix 3	AA3	A	83	95	Right-handed alpha
Helix 4	AA4	A	98	117	Right-handed alpha
Helix 5	AA5	A	118	123	Right-handed alpha
Helix 6	AA6	A	157	170	Right-handed alpha
Helix 7	AA7	A	182	195	Right-handed alpha
Helix 8	AA8	A	209	219	Right-handed alpha
Helix 9	AA9	A	230	244	Right-handed alpha
Helix 10	AB1	A	265	279	Right-handed alpha
Helix 11	AB2	A	280	283	Right-handed 310
Helix 12	AB3	A	296	299	Right-handed 310
Helix 13	AB4	A	300	310	Right-handed alpha
Helix 14	AB5	A	328	345	Right-handed alpha
Helix 15	AB6	A	379	384	Right-handed alpha
Helix 16	AB7	A	398	409	Right-handed alpha
Helix 17	AB8	A	421	432	Right-handed alpha
Helix 18	AB9	A	466	474	Right-handed alpha
Helix 19	AC1	A	485	489	Right-handed 310
Helix 20	AC2	B	43	64	Right-handed alpha
Helix 21	AC3	B	65	83	Right-handed alpha
Helix 22	AC4	B	83	95	Right-handed alpha
Helix 23	AC5	B	98	117	Right-handed alpha
Helix 24	AC6	B	118	123	Right-handed alpha
Helix 25	AC7	B	157	170	Right-handed alpha
Helix 26	AC8	B	182	196	Right-handed alpha
Helix 27	AC9	B	209	219	Right-handed alpha
Helix 28	AD1	B	230	244	Right-handed alpha
Helix 29	AD2	B	265	279	Right-handed alpha
Helix 30	AD3	B	280	283	Right-handed 310
Helix 31	AD4	B	296	299	Right-handed 310
Helix 32	AD5	B	300	310	Right-handed alpha
Helix 33	AD6	B	328	345	Right-handed alpha
Helix 34	AD7	B	379	384	Right-handed alpha
Helix 35	AD8	B	398	409	Right-handed alpha
Helix 36	AD9	B	421	432	Right-handed alpha
Helix 37	AE1	B	466	474	Right-handed alpha
Helix 38	AE2	B	485	489	Right-handed 310
Helix 39	AE3	C	43	64	Right-handed alpha
Helix 40	AE4	C	65	83	Right-handed alpha
Helix 41	AE5	C	83	95	Right-handed alpha
Helix 42	AE6	C	98	117	Right-handed alpha
Helix 43	AE7	C	118	123	Right-handed alpha
Helix 44	AE8	C	157	170	Right-handed alpha
Helix 45	AE9	C	182	196	Right-handed alpha
Helix 46	AF1	C	210	219	Right-handed alpha
Helix 47	AF2	C	230	244	Right-handed alpha
Helix 48	AF3	C	265	279	Right-handed alpha
Helix 49	AF4	C	280	283	Right-handed 310
Helix 50	AF5	C	296	299	Right-handed 310
Helix 51	AF6	C	300	310	Right-handed alpha
Helix 52	AF7	C	328	345	Right-handed alpha
Helix 53	AF8	C	379	384	Right-handed alpha
Helix 54	AF9	C	398	409	Right-handed alpha
Helix 55	AG1	C	421	432	Right-handed alpha
Helix 56	AG2	C	466	474	Right-handed alpha
Helix 57	AG3	C	485	489	Right-handed 310
Helix 58	AG4	D	43	64	Right-handed alpha
Helix 59	AG5	D	65	83	Right-handed alpha
Helix 60	AG6	D	83	95	Right-handed alpha
Helix 61	AG7	D	98	117	Right-handed alpha
Helix 62	AG8	D	118	123	Right-handed alpha
Helix 63	AG9	D	157	170	Right-handed alpha
Helix 64	AH1	D	182	195	Right-handed alpha
Helix 65	AH2	D	210	219	Right-handed alpha
Helix 66	AH3	D	230	244	Right-handed alpha
Helix 67	AH4	D	265	279	Right-handed alpha
Helix 68	AH5	D	280	283	Right-handed 310
Helix 69	AH6	D	296	299	Right-handed 310
Helix 70	AH7	D	300	310	Right-handed alpha
Helix 71	AH8	D	328	345	Right-handed alpha
Helix 72	AH9	D	379	384	Right-handed alpha
Helix 73	AI1	D	398	409	Right-handed alpha
Helix 74	AI2	D	421	432	Right-handed alpha
Helix 75	AI3	D	467	474	Right-handed alpha
Helix 76	AI4	D	485	489	Right-handed 310

There are 16 sheets in PDB entry 8XXQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	15	17	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	28	first strand
Strand 2	A	35	40	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	132	first strand
Strand 2	A	135	143	anti-parallel
Strand 3	A	475	483	anti-parallel
Strand 4	B	436	439	parallel
Strand 5	B	415	418	parallel
Strand 6	B	257	260	parallel
Strand 7	B	290	294	parallel
Strand 8	B	390	396	parallel
Strand 9	B	370	373	parallel
Strand 10	B	348	351	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	205	first strand
Strand 2	A	173	177	parallel
Strand 3	A	146	150	parallel
Strand 4	A	222	228	parallel
Strand 5	A	247	251	parallel
Strand 6	A	459	460	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	351	first strand
Strand 2	A	370	373	anti-parallel
Strand 3	A	390	396	parallel
Strand 4	A	290	294	parallel
Strand 5	A	257	260	parallel
Strand 6	A	415	418	parallel
Strand 7	A	436	439	parallel
Strand 8	B	475	483	parallel
Strand 9	B	135	143	anti-parallel
Strand 10	B	126	129	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	15	17	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	28	first strand
Strand 2	B	35	40	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	173	177	parallel
Strand 3	B	146	150	parallel
Strand 4	B	222	228	parallel
Strand 5	B	247	251	parallel
Strand 6	B	459	460	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	15	17	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	28	first strand
Strand 2	C	35	40	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	132	first strand
Strand 2	C	135	143	anti-parallel
Strand 3	C	475	483	anti-parallel
Strand 4	D	436	439	parallel
Strand 5	D	415	418	parallel
Strand 6	D	257	260	parallel
Strand 7	D	290	294	parallel
Strand 8	D	390	396	parallel
Strand 9	D	370	373	parallel
Strand 10	D	348	351	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	205	first strand
Strand 2	C	173	177	parallel
Strand 3	C	146	150	parallel
Strand 4	C	222	228	parallel
Strand 5	C	247	251	parallel
Strand 6	C	459	460	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	351	first strand
Strand 2	C	370	373	anti-parallel
Strand 3	C	390	396	parallel
Strand 4	C	290	294	parallel
Strand 5	C	257	260	parallel
Strand 6	C	415	418	parallel
Strand 7	C	436	439	parallel
Strand 8	D	475	483	parallel
Strand 9	D	135	143	anti-parallel
Strand 10	D	127	132	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	15	17	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	28	first strand
Strand 2	D	35	40	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	205	first strand
Strand 2	D	173	177	parallel
Strand 3	D	146	150	parallel
Strand 4	D	222	228	parallel
Strand 5	D	247	251	parallel
Strand 6	D	459	460	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XXQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XXQ