Analysis of interatomic Contacts of Structural Units in PDB entry:
8XY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XY5 entry

There are 2 chains in PDB entry 8XY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 46VAL 364
B
 ASP 46VAL 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8XY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 70Right-handed 310
Helix 2
AA2
A
76 84Right-handed alpha
Helix 3
AA3
A
104 121Right-handed alpha
Helix 4
AA4
A
131 144Right-handed alpha
Helix 5
AA5
A
161 172Right-handed alpha
Helix 6
AA6
A
177 195Right-handed alpha
Helix 7
AA7
A
203 211Right-handed alpha
Helix 8
AA8
A
212 223Right-handed alpha
Helix 9
AA9
A
280 286Right-handed alpha
Helix 10
AB1
A
287 301Right-handed alpha
Helix 11
AB2
A
312 317Right-handed alpha
Helix 12
AB3
A
331 335Right-handed 310
Helix 13
AB4
A
347 362Right-handed alpha
Helix 14
AB5
B
68 70Right-handed 310
Helix 15
AB6
B
76 84Right-handed alpha
Helix 16
AB7
B
104 121Right-handed alpha
Helix 17
AB8
B
131 144Right-handed alpha
Helix 18
AB9
B
161 172Right-handed alpha
Helix 19
AC1
B
177 195Right-handed alpha
Helix 20
AC2
B
203 211Right-handed alpha
Helix 21
AC3
B
212 223Right-handed alpha
Helix 22
AC4
B
280 286Right-handed alpha
Helix 23
AC5
B
287 301Right-handed alpha
Helix 24
AC6
B
312 317Right-handed alpha
Helix 25
AC7
B
331 335Right-handed 310
Helix 26
AC8
B
347 362Right-handed alpha
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There are 8 sheets in PDB entry 8XY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
55 58parallel
Strand 3
A
125 130parallel
Strand 4
A
148 154parallel
Strand 5
A
246 255parallel
Strand 6
A
240 243anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
55 58parallel
Strand 3
A
125 130parallel
Strand 4
A
148 154parallel
Strand 5
A
246 255parallel
Strand 6
A
320 326parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
71 72anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 264first strand
Strand 2
A
267 272anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 90first strand
Strand 2
B
55 58parallel
Strand 3
B
125 130parallel
Strand 4
B
148 154parallel
Strand 5
B
246 255parallel
Strand 6
B
240 243anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 90first strand
Strand 2
B
55 58parallel
Strand 3
B
125 130parallel
Strand 4
B
148 154parallel
Strand 5
B
246 255parallel
Strand 6
B
320 326parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
71 72anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 264first strand
Strand 2
B
267 272anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il