Analysis of interatomic Contacts of Structural Units in PDB entry:
8XY7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XY7 entry

There are 2 chains in PDB entry 8XY7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3ALA 1221
C
 THR 329LEU 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 8XY7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 22Right-handed alpha
Helix 2
AA2
A
23 26Right-handed 310
Helix 3
AA3
A
44 51Right-handed alpha
Helix 4
AA4
A
51 63Right-handed alpha
Helix 5
AA5
A
67 94Right-handed alpha
Helix 6
AA6
A
95 105Right-handed alpha
Helix 7
AA7
A
107 111Right-handed 310
Helix 8
AA8
A
126 130Right-handed 310
Helix 9
AA9
A
134 150Right-handed alpha
Helix 10
AB1
A
159 172Right-handed alpha
Helix 11
AB2
A
198 212Right-handed alpha
Helix 12
AB3
A
232 246Right-handed alpha
Helix 13
AB4
A
256 258Right-handed 310
Helix 14
AB5
A
259 264Right-handed alpha
Helix 15
AB6
A
272 287Right-handed alpha
Helix 16
AB7
A
329 338Right-handed alpha
Helix 17
AB8
A
376 378Right-handed 310
Helix 18
AB9
A
379 386Right-handed alpha
Helix 19
AC1
A
400 415Right-handed alpha
Helix 20
AC2
A
419 424Right-handed alpha
Helix 21
AC3
A
427 432Right-handed 310
Helix 22
AC4
A
448 458Right-handed alpha
Helix 23
AC5
A
475 484Right-handed alpha
Helix 24
AC6
A
505 509Right-handed 310
Helix 25
AC7
A
522 527Right-handed alpha
Helix 26
AC8
A
530 534Right-handed 310
Helix 27
AC9
A
535 554Right-handed alpha
Helix 28
AD1
A
567 571Right-handed 310
Helix 29
AD2
A
579 591Right-handed alpha
Helix 30
AD3
A
605 609Right-handed 310
Helix 31
AD4
A
617 620Right-handed 310
Helix 32
AD5
A
766 771Right-handed 310
Helix 33
AD6
A
781 790Right-handed alpha
Helix 34
AD7
A
805 821Right-handed alpha
Helix 35
AD8
A
822 833Right-handed alpha
Helix 36
AD9
A
839 850Right-handed alpha
Helix 37
AE1
A
872 884Right-handed alpha
Helix 38
AE2
A
890 908Right-handed alpha
Helix 39
AE3
A
909 913Right-handed 310
Helix 40
AE4
A
920 934Right-handed alpha
Helix 41
AE5
A
938 946Right-handed alpha
Helix 42
AE6
A
950 964Right-handed alpha
Helix 43
AE7
A
1052 1064Right-handed alpha
Helix 44
AE8
A
1070 1082Right-handed alpha
Helix 45
AE9
A
1095 1097Right-handed 310
Helix 46
AF1
A
1106 1115Right-handed alpha
Helix 47
AF2
A
1120 1141Right-handed alpha
Helix 48
AF3
A
1151 1170Right-handed alpha
Helix 49
AF4
A
1185 1191Right-handed alpha
Helix 50
AF5
A
1198 1208Right-handed alpha
Helix 51
AF6
C
330 336Right-handed alpha
Helix 52
AF7
C
340 356Right-handed alpha
Helix 53
AF8
C
367 371Right-handed 310
Helix 54
AF9
C
375 380Right-handed alpha
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There are 8 sheets in PDB entry 8XY7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
115 116anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
292 294anti-parallel
Strand 3
A
327 328anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 374first strand
Strand 2
A
393 395anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 464first strand
Strand 2
A
440 446parallel
Strand 3
A
561 566parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 464first strand
Strand 2
A
440 446parallel
Strand 3
A
597 601parallel
Strand 4
A
593 594anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 474first strand
Strand 2
A
516 520parallel
Strand 3
A
511 513anti-parallel
Strand 4
A
614 615parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
866 867first strand
Strand 2
A
853 855anti-parallel
Strand 3
A
917 919parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1090 1093first strand
Strand 2
A
1084 1087anti-parallel
Strand 3
A
1149 1150parallel
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