Analysis of interatomic Contacts of Structural Units in PDB entry:
8XY9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XY9 entry

There are 3 chains in PDB entry 8XY9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19ASP 615
B
 THR 333GLY 526
C
 SER 19ARG 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 78 helices in PDB entry 8XY9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 53Right-handed alpha
Helix 2
AA2
A
55 81Right-handed alpha
Helix 3
AA3
A
82 83Right-handed 310
Helix 4
AA4
A
84 88Right-handed 310
Helix 5
AA5
A
90 102Right-handed alpha
Helix 6
AA6
A
104 108Right-handed 310
Helix 7
AA7
A
109 130Right-handed alpha
Helix 8
AA8
A
146 155Right-handed alpha
Helix 9
AA9
A
157 172Right-handed alpha
Helix 10
AB1
A
172 194Right-handed alpha
Helix 11
AB2
A
198 205Right-handed alpha
Helix 12
AB3
A
206 208Right-handed 310
Helix 13
AB4
A
218 252Right-handed alpha
Helix 14
AB5
A
265 267Right-handed 310
Helix 15
AB6
A
275 277Right-handed 310
Helix 16
AB7
A
278 283Right-handed alpha
Helix 17
AB8
A
293 300Right-handed alpha
Helix 18
AB9
A
303 318Right-handed alpha
Helix 19
AC1
A
324 331Right-handed alpha
Helix 20
AC2
A
365 385Right-handed alpha
Helix 21
AC3
A
386 388Right-handed 310
Helix 22
AC4
A
389 393Right-handed 310
Helix 23
AC5
A
399 414Right-handed alpha
Helix 24
AC6
A
414 421Right-handed alpha
Helix 25
AC7
A
433 446Right-handed alpha
Helix 26
AC8
A
448 466Right-handed alpha
Helix 27
AC9
A
469 471Right-handed 310
Helix 28
AD1
A
472 484Right-handed alpha
Helix 29
AD2
A
499 503Right-handed 310
Helix 30
AD3
A
513 533Right-handed alpha
Helix 31
AD4
A
538 542Right-handed 310
Helix 32
AD5
A
547 559Right-handed alpha
Helix 33
AD6
A
565 575Right-handed alpha
Helix 34
AD7
A
581 599Right-handed alpha
Helix 35
AD8
A
600 602Right-handed 310
Helix 36
AD9
B
349 353Right-handed 310
Helix 37
AE1
B
364 369Right-handed alpha
Helix 38
AE2
B
385 390Right-handed 310
Helix 39
AE3
B
403 408Right-handed alpha
Helix 40
AE4
B
438 443Right-handed alpha
Helix 41
AE5
C
20 52Right-handed alpha
Helix 42
AE6
C
55 81Right-handed alpha
Helix 43
AE7
C
82 83Right-handed 310
Helix 44
AE8
C
84 88Right-handed 310
Helix 45
AE9
C
90 101Right-handed alpha
Helix 46
AF1
C
109 130Right-handed alpha
Helix 47
AF2
C
146 155Right-handed alpha
Helix 48
AF3
C
157 172Right-handed alpha
Helix 49
AF4
C
172 194Right-handed alpha
Helix 50
AF5
C
198 205Right-handed alpha
Helix 51
AF6
C
206 208Right-handed 310
Helix 52
AF7
C
218 252Right-handed alpha
Helix 53
AF8
C
265 267Right-handed 310
Helix 54
AF9
C
275 277Right-handed 310
Helix 55
AG1
C
278 283Right-handed alpha
Helix 56
AG2
C
293 300Right-handed alpha
Helix 57
AG3
C
303 317Right-handed alpha
Helix 58
AG4
C
324 331Right-handed alpha
Helix 59
AG5
C
365 385Right-handed alpha
Helix 60
AG6
C
389 393Right-handed 310
Helix 61
AG7
C
399 414Right-handed alpha
Helix 62
AG8
C
414 421Right-handed alpha
Helix 63
AG9
C
431 447Right-handed alpha
Helix 64
AH1
C
448 466Right-handed alpha
Helix 65
AH2
C
469 471Right-handed 310
Helix 66
AH3
C
472 484Right-handed alpha
Helix 67
AH4
C
498 502Right-handed 310
Helix 68
AH5
C
503 508Right-handed alpha
Helix 69
AH6
C
512 533Right-handed alpha
Helix 70
AH7
C
538 542Right-handed 310
Helix 71
AH8
C
547 559Right-handed alpha
Helix 72
AH9
C
565 575Right-handed alpha
Helix 73
AI1
C
581 599Right-handed alpha
Helix 74
AI2
D
338 343Right-handed alpha
Helix 75
AI3
D
349 353Right-handed 310
Helix 76
AI4
D
364 369Right-handed alpha
Helix 77
AI5
D
385 390Right-handed 310
Helix 78
AI6
D
404 408Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 8XY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
141 143anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 359anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 358first strand
Strand 2
B
395 402anti-parallel
Strand 3
B
508 514anti-parallel
Strand 4
B
432 437anti-parallel
Strand 5
B
376 379anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 454first strand
Strand 2
B
492 494anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 133first strand
Strand 2
C
141 143anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
262 263first strand
Strand 2
C
487 488parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
347 352first strand
Strand 2
C
355 359anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
354 358first strand
Strand 2
D
395 403anti-parallel
Strand 3
D
507 514anti-parallel
Strand 4
D
432 435anti-parallel
Strand 5
D
376 379anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
452 454first strand
Strand 2
D
492 494anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il