Analysis of interatomic Contacts of Structural Units in PDB entry:
8XYA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XYA entry

There are 4 chains in PDB entry 8XYA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 2	GLN 1223
B	ASP 41	ILE 1092
D	GLN 4	ALA 148
C	SER 12	LEU 382

There are127 helices in PDB entry 8XYA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	22	Right-handed alpha
Helix 2	AA2	A	23	26	Right-handed 310
Helix 3	AA3	A	44	51	Right-handed alpha
Helix 4	AA4	A	51	63	Right-handed alpha
Helix 5	AA5	A	67	94	Right-handed alpha
Helix 6	AA6	A	95	105	Right-handed alpha
Helix 7	AA7	A	107	111	Right-handed 310
Helix 8	AA8	A	134	151	Right-handed alpha
Helix 9	AA9	A	158	174	Right-handed alpha
Helix 10	AB1	A	175	178	Right-handed 310
Helix 11	AB2	A	198	212	Right-handed alpha
Helix 12	AB3	A	223	225	Right-handed 310
Helix 13	AB4	A	231	246	Right-handed alpha
Helix 14	AB5	A	256	258	Right-handed 310
Helix 15	AB6	A	259	264	Right-handed alpha
Helix 16	AB7	A	272	287	Right-handed alpha
Helix 17	AB8	A	314	322	Right-handed 310
Helix 18	AB9	A	329	343	Right-handed alpha
Helix 19	AC1	A	346	357	Right-handed alpha
Helix 20	AC2	A	376	378	Right-handed 310
Helix 21	AC3	A	379	386	Right-handed alpha
Helix 22	AC4	A	400	415	Right-handed alpha
Helix 23	AC5	A	419	424	Right-handed alpha
Helix 24	AC6	A	427	433	Right-handed 310
Helix 25	AC7	A	448	458	Right-handed alpha
Helix 26	AC8	A	475	483	Right-handed alpha
Helix 27	AC9	A	484	486	Right-handed 310
Helix 28	AD1	A	503	508	Right-handed alpha
Helix 29	AD2	A	522	526	Right-handed 310
Helix 30	AD3	A	535	553	Right-handed alpha
Helix 31	AD4	A	567	571	Right-handed 310
Helix 32	AD5	A	579	591	Right-handed alpha
Helix 33	AD6	A	617	620	Right-handed 310
Helix 34	AD7	A	660	669	Right-handed alpha
Helix 35	AD8	A	779	789	Right-handed alpha
Helix 36	AD9	A	810	821	Right-handed alpha
Helix 37	AE1	A	822	834	Right-handed alpha
Helix 38	AE2	A	839	849	Right-handed alpha
Helix 39	AE3	A	872	883	Right-handed alpha
Helix 40	AE4	A	887	908	Right-handed alpha
Helix 41	AE5	A	909	913	Right-handed 310
Helix 42	AE6	A	920	934	Right-handed alpha
Helix 43	AE7	A	938	949	Right-handed alpha
Helix 44	AE8	A	950	964	Right-handed alpha
Helix 45	AE9	A	1052	1059	Right-handed alpha
Helix 46	AF1	A	1070	1080	Right-handed alpha
Helix 47	AF2	A	1094	1100	Right-handed alpha
Helix 48	AF3	A	1104	1116	Right-handed alpha
Helix 49	AF4	A	1120	1141	Right-handed alpha
Helix 50	AF5	A	1151	1170	Right-handed alpha
Helix 51	AF6	A	1185	1191	Right-handed alpha
Helix 52	AF7	A	1198	1215	Right-handed alpha
Helix 53	AF8	B	44	60	Right-handed alpha
Helix 54	AF9	B	61	64	Right-handed 310
Helix 55	AG1	B	84	102	Right-handed alpha
Helix 56	AG2	B	109	131	Right-handed alpha
Helix 57	AG3	B	132	142	Right-handed alpha
Helix 58	AG4	B	171	189	Right-handed alpha
Helix 59	AG5	B	195	211	Right-handed alpha
Helix 60	AG6	B	212	215	Right-handed 310
Helix 61	AG7	B	235	250	Right-handed alpha
Helix 62	AG8	B	268	283	Right-handed alpha
Helix 63	AG9	B	295	301	Right-handed alpha
Helix 64	AH1	B	309	325	Right-handed alpha
Helix 65	AH2	B	355	359	Right-handed 310
Helix 66	AH3	B	366	380	Right-handed alpha
Helix 67	AH4	B	381	396	Right-handed alpha
Helix 68	AH5	B	413	415	Right-handed 310
Helix 69	AH6	B	416	423	Right-handed alpha
Helix 70	AH7	B	441	456	Right-handed alpha
Helix 71	AH8	B	503	512	Right-handed alpha
Helix 72	AH9	B	530	539	Right-handed alpha
Helix 73	AI1	B	558	564	Right-handed alpha
Helix 74	AI2	B	577	581	Right-handed 310
Helix 75	AI3	B	590	609	Right-handed alpha
Helix 76	AI4	B	622	627	Right-handed alpha
Helix 77	AI5	B	630	644	Right-handed alpha
Helix 78	AI6	B	657	661	Right-handed 310
Helix 79	AI7	B	669	674	Right-handed alpha
Helix 80	AI8	B	715	721	Right-handed alpha
Helix 81	AI9	B	726	734	Right-handed alpha
Helix 82	AJ1	B	736	751	Right-handed alpha
Helix 83	AJ2	B	761	777	Right-handed alpha
Helix 84	AJ3	B	778	788	Right-handed alpha
Helix 85	AJ4	B	795	805	Right-handed alpha
Helix 86	AJ5	B	827	837	Right-handed alpha
Helix 87	AJ6	B	844	864	Right-handed alpha
Helix 88	AJ7	B	865	869	Right-handed 310
Helix 89	AJ8	B	876	892	Right-handed alpha
Helix 90	AJ9	B	903	914	Right-handed alpha
Helix 91	AK1	B	923	934	Right-handed alpha
Helix 92	AK2	B	940	950	Right-handed alpha
Helix 93	AK3	B	967	972	Right-handed alpha
Helix 94	AK4	B	976	988	Right-handed alpha
Helix 95	AK5	B	992	1013	Right-handed alpha
Helix 96	AK6	B	1024	1043	Right-handed alpha
Helix 97	AK7	B	1051	1057	Right-handed alpha
Helix 98	AK8	B	1064	1078	Right-handed alpha
Helix 99	AK9	D	6	21	Right-handed alpha
Helix 100	AL1	D	30	40	Right-handed alpha
Helix 101	AL2	D	45	58	Right-handed alpha
Helix 102	AL3	D	65	74	Right-handed alpha
Helix 103	AL4	D	78	94	Right-handed alpha
Helix 104	AL5	D	102	114	Right-handed alpha
Helix 105	AL6	D	118	130	Right-handed alpha
Helix 106	AL7	D	138	148	Right-handed alpha
Helix 107	AL8	C	13	18	Right-handed alpha
Helix 108	AL9	C	54	58	Right-handed 310
Helix 109	AM1	C	60	81	Right-handed alpha
Helix 110	AM2	C	111	119	Right-handed alpha
Helix 111	AM3	C	123	144	Right-handed alpha
Helix 112	AM4	C	152	154	Right-handed 310
Helix 113	AM5	C	187	191	Right-handed 310
Helix 114	AM6	C	192	201	Right-handed alpha
Helix 115	AM7	C	210	226	Right-handed alpha
Helix 116	AM8	C	234	245	Right-handed alpha
Helix 117	AM9	C	252	256	Right-handed 310
Helix 118	AN1	C	258	270	Right-handed alpha
Helix 119	AN2	C	272	276	Right-handed 310
Helix 120	AN3	C	278	283	Right-handed alpha
Helix 121	AN4	C	284	289	Right-handed 310
Helix 122	AN5	C	300	325	Right-handed alpha
Helix 123	AN6	C	329	336	Right-handed alpha
Helix 124	AN7	C	340	355	Right-handed alpha
Helix 125	AN8	C	356	359	Right-handed 310
Helix 126	AN9	C	366	371	Right-handed 310
Helix 127	AO1	C	375	380	Right-handed alpha

There are 22 sheets in PDB entry 8XYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	115	117	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	216	first strand
Strand 2	A	227	228	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	362	first strand
Strand 2	A	366	368	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	374	first strand
Strand 2	A	393	395	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	464	first strand
Strand 2	A	439	446	parallel
Strand 3	A	561	566	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	464	first strand
Strand 2	A	439	446	parallel
Strand 3	A	597	601	parallel
Strand 4	A	593	594	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	474	first strand
Strand 2	A	516	520	parallel
Strand 3	A	510	513	anti-parallel
Strand 4	A	613	615	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	489	first strand
Strand 2	A	494	495	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	865	867	first strand
Strand 2	A	853	856	anti-parallel
Strand 3	A	917	919	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1090	1093	first strand
Strand 2	A	1084	1087	anti-parallel
Strand 3	A	1148	1150	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	152	154	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	264	265	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	331	first strand
Strand 2	B	364	365	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	398	first strand
Strand 2	B	404	405	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	411	first strand
Strand 2	B	430	431	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	616	621	first strand
Strand 2	B	495	501	parallel
Strand 3	B	649	653	parallel
Strand 4	B	645	646	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	527	529	first strand
Strand 2	B	571	575	parallel
Strand 3	B	565	568	anti-parallel
Strand 4	B	665	667	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	820	822	first strand
Strand 2	B	809	812	anti-parallel
Strand 3	B	873	875	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	961	963	first strand
Strand 2	B	956	958	anti-parallel
Strand 3	B	1022	1023	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	29	first strand
Strand 2	D	63	64	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	27	first strand
Strand 2	C	32	39	anti-parallel
Strand 3	C	44	52	anti-parallel
Strand 4	C	99	105	anti-parallel
Strand 5	C	92	95	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	158	first strand
Strand 2	C	164	166	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XYA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XYA