Analysis of interatomic Contacts of Structural Units in PDB entry:
8XYB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XYB entry

There are 3 chains in PDB entry 8XYB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1051GLN 1223
D
 GLN 4ALA 148
C
 SER 12LEU 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8XYB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1052 1059Right-handed alpha
Helix 2
AA2
A
1070 1080Right-handed alpha
Helix 3
AA3
A
1094 1100Right-handed alpha
Helix 4
AA4
A
1104 1116Right-handed alpha
Helix 5
AA5
A
1120 1141Right-handed alpha
Helix 6
AA6
A
1151 1170Right-handed alpha
Helix 7
AA7
A
1185 1191Right-handed alpha
Helix 8
AA8
A
1198 1215Right-handed alpha
Helix 9
AA9
D
6 21Right-handed alpha
Helix 10
AB1
D
30 40Right-handed alpha
Helix 11
AB2
D
45 58Right-handed alpha
Helix 12
AB3
D
65 74Right-handed alpha
Helix 13
AB4
D
78 94Right-handed alpha
Helix 14
AB5
D
102 114Right-handed alpha
Helix 15
AB6
D
118 130Right-handed alpha
Helix 16
AB7
D
138 148Right-handed alpha
Helix 17
AB8
C
13 18Right-handed alpha
Helix 18
AB9
C
54 58Right-handed 310
Helix 19
AC1
C
60 81Right-handed alpha
Helix 20
AC2
C
111 119Right-handed alpha
Helix 21
AC3
C
123 144Right-handed alpha
Helix 22
AC4
C
152 154Right-handed 310
Helix 23
AC5
C
187 191Right-handed 310
Helix 24
AC6
C
192 201Right-handed alpha
Helix 25
AC7
C
210 226Right-handed alpha
Helix 26
AC8
C
234 245Right-handed alpha
Helix 27
AC9
C
252 256Right-handed 310
Helix 28
AD1
C
258 270Right-handed alpha
Helix 29
AD2
C
272 276Right-handed 310
Helix 30
AD3
C
278 283Right-handed alpha
Helix 31
AD4
C
284 289Right-handed 310
Helix 32
AD5
C
300 325Right-handed alpha
Helix 33
AD6
C
329 336Right-handed alpha
Helix 34
AD7
C
340 355Right-handed alpha
Helix 35
AD8
C
356 359Right-handed 310
Helix 36
AD9
C
366 371Right-handed 310
Helix 37
AE1
C
375 380Right-handed alpha
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There are 4 sheets in PDB entry 8XYB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1090 1093first strand
Strand 2
A
1084 1087anti-parallel
Strand 3
A
1148 1150parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 29first strand
Strand 2
D
63 64anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 27first strand
Strand 2
C
32 39anti-parallel
Strand 3
C
44 52anti-parallel
Strand 4
C
99 105anti-parallel
Strand 5
C
92 95anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
156 158first strand
Strand 2
C
164 166anti-parallel
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