Analysis of interatomic Contacts of Structural Units in PDB entry:
8XYC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XYC entry

There are 4 chains in PDB entry 8XYC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 G 6 C 33
D
 G -8 G -1
A
 ASN 8VAL 878
C
 G -126 C 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8XYC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 19Right-handed alpha
Helix 2
AA2
A
48 78Right-handed alpha
Helix 3
AA3
A
79 87Right-handed alpha
Helix 4
AA4
A
99 109Right-handed alpha
Helix 5
AA5
A
119 162Right-handed alpha
Helix 6
AA6
A
162 170Right-handed alpha
Helix 7
AA7
A
182 186Right-handed 310
Helix 8
AA8
A
187 209Right-handed alpha
Helix 9
AA9
A
243 260Right-handed alpha
Helix 10
AB1
A
261 267Right-handed alpha
Helix 11
AB2
A
270 281Right-handed alpha
Helix 12
AB3
A
298 313Right-handed alpha
Helix 13
AB4
A
317 344Right-handed alpha
Helix 14
AB5
A
347 372Right-handed alpha
Helix 15
AB6
A
374 396Right-handed alpha
Helix 16
AB7
A
509 517Right-handed alpha
Helix 17
AB8
A
603 623Right-handed alpha
Helix 18
AB9
A
628 656Right-handed alpha
Helix 19
AC1
A
685 697Right-handed alpha
Helix 20
AC2
A
835 849Right-handed alpha
Helix 21
AC3
A
849 854Right-handed alpha
Helix 22
AC4
A
863 878Right-handed alpha
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There are 5 sheets in PDB entry 8XYC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
550 561anti-parallel
Strand 3
A
530 541anti-parallel
Strand 4
A
402 408anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
550 561anti-parallel
Strand 3
A
39 41anti-parallel
Strand 4
A
506 507anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 453first strand
Strand 2
A
487 496anti-parallel
Strand 3
A
463 474anti-parallel
Strand 4
A
424 429anti-parallel
Strand 5
A
438 443anti-parallel
Strand 6
A
502 503anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 600first strand
Strand 2
A
583 589anti-parallel
Strand 3
A
571 577anti-parallel
Strand 4
A
659 662parallel
Strand 5
A
717 720parallel
Strand 6
A
713 714anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
825 826first strand
Strand 2
A
833 834anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il