Analysis of interatomic Contacts of Structural Units in PDB entry:
8XYE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XYE entry

There are 4 chains in PDB entry 8XYE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 17	ALA 614
C	THR 333	GLY 526
D	THR 333	GLY 526
A	PRO 18	PRO 263

There are 84 helices in PDB entry 8XYE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	20	52	Right-handed alpha
Helix 2	AA2	B	55	81	Right-handed alpha
Helix 3	AA3	B	82	83	Right-handed 310
Helix 4	AA4	B	84	88	Right-handed 310
Helix 5	AA5	B	90	102	Right-handed alpha
Helix 6	AA6	B	103	108	Right-handed 310
Helix 7	AA7	B	109	129	Right-handed alpha
Helix 8	AA8	B	147	155	Right-handed alpha
Helix 9	AA9	B	157	172	Right-handed alpha
Helix 10	AB1	B	172	194	Right-handed alpha
Helix 11	AB2	B	198	205	Right-handed alpha
Helix 12	AB3	B	206	208	Right-handed 310
Helix 13	AB4	B	218	250	Right-handed alpha
Helix 14	AB5	B	278	283	Right-handed alpha
Helix 15	AB6	B	293	300	Right-handed alpha
Helix 16	AB7	B	303	317	Right-handed alpha
Helix 17	AB8	B	324	331	Right-handed alpha
Helix 18	AB9	B	336	340	Right-handed 310
Helix 19	AC1	B	365	385	Right-handed alpha
Helix 20	AC2	B	386	388	Right-handed 310
Helix 21	AC3	B	389	393	Right-handed 310
Helix 22	AC4	B	399	414	Right-handed alpha
Helix 23	AC5	B	414	421	Right-handed alpha
Helix 24	AC6	B	431	466	Right-handed alpha
Helix 25	AC7	B	469	471	Right-handed 310
Helix 26	AC8	B	472	484	Right-handed alpha
Helix 27	AC9	B	499	502	Right-handed 310
Helix 28	AD1	B	503	508	Right-handed alpha
Helix 29	AD2	B	513	533	Right-handed alpha
Helix 30	AD3	B	538	542	Right-handed 310
Helix 31	AD4	B	547	559	Right-handed alpha
Helix 32	AD5	B	565	575	Right-handed alpha
Helix 33	AD6	B	581	599	Right-handed alpha
Helix 34	AD7	C	337	343	Right-handed alpha
Helix 35	AD8	C	349	353	Right-handed 310
Helix 36	AD9	C	367	371	Right-handed 310
Helix 37	AE1	C	385	390	Right-handed 310
Helix 38	AE2	C	403	408	Right-handed alpha
Helix 39	AE3	C	417	422	Right-handed alpha
Helix 40	AE4	C	438	443	Right-handed alpha
Helix 41	AE5	C	502	506	Right-handed 310
Helix 42	AE6	D	338	343	Right-handed alpha
Helix 43	AE7	D	349	353	Right-handed 310
Helix 44	AE8	D	364	369	Right-handed alpha
Helix 45	AE9	D	386	390	Right-handed 310
Helix 46	AF1	D	404	408	Right-handed alpha
Helix 47	AF2	D	417	422	Right-handed alpha
Helix 48	AF3	D	438	443	Right-handed alpha
Helix 49	AF4	D	502	505	Right-handed 310
Helix 50	AF5	A	20	53	Right-handed alpha
Helix 51	AF6	A	55	81	Right-handed alpha
Helix 52	AF7	A	82	83	Right-handed 310
Helix 53	AF8	A	84	88	Right-handed 310
Helix 54	AF9	A	90	102	Right-handed alpha
Helix 55	AG1	A	103	108	Right-handed 310
Helix 56	AG2	A	109	130	Right-handed alpha
Helix 57	AG3	A	147	155	Right-handed alpha
Helix 58	AG4	A	157	194	Right-handed alpha
Helix 59	AG5	A	198	205	Right-handed alpha
Helix 60	AG6	A	206	208	Right-handed 310
Helix 61	AG7	A	220	252	Right-handed alpha
Helix 62	AG8	A	253	256	Right-handed 310
Helix 63	AG9	A	265	267	Right-handed 310
Helix 64	AH1	A	278	283	Right-handed alpha
Helix 65	AH2	A	293	300	Right-handed alpha
Helix 66	AH3	A	303	318	Right-handed alpha
Helix 67	AH4	A	324	331	Right-handed alpha
Helix 68	AH5	A	365	385	Right-handed alpha
Helix 69	AH6	A	389	393	Right-handed 310
Helix 70	AH7	A	400	414	Right-handed alpha
Helix 71	AH8	A	414	421	Right-handed alpha
Helix 72	AH9	A	431	447	Right-handed alpha
Helix 73	AI1	A	448	466	Right-handed alpha
Helix 74	AI2	A	469	471	Right-handed 310
Helix 75	AI3	A	472	484	Right-handed alpha
Helix 76	AI4	A	498	502	Right-handed 310
Helix 77	AI5	A	503	508	Right-handed alpha
Helix 78	AI6	A	513	533	Right-handed alpha
Helix 79	AI7	A	538	542	Right-handed 310
Helix 80	AI8	A	547	559	Right-handed alpha
Helix 81	AI9	A	565	575	Right-handed alpha
Helix 82	AJ1	A	581	588	Right-handed alpha
Helix 83	AJ2	A	588	599	Right-handed alpha
Helix 84	AJ3	A	600	602	Right-handed 310

There are 13 sheets in PDB entry 8XYE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	133	first strand
Strand 2	B	141	143	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	263	first strand
Strand 2	B	487	488	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	352	first strand
Strand 2	B	355	359	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	394	402	anti-parallel
Strand 3	C	508	516	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	376	379	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	524	525	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	358	first strand
Strand 2	D	394	403	anti-parallel
Strand 3	D	507	516	anti-parallel
Strand 4	D	432	437	anti-parallel
Strand 5	D	376	379	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	361	362	first strand
Strand 2	D	524	525	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	454	first strand
Strand 2	D	492	494	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	133	first strand
Strand 2	A	141	143	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	487	488	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	352	first strand
Strand 2	A	355	359	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XYE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XYE