Analysis of interatomic Contacts of Structural Units in PDB entry:
8XYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XYF entry

There are 2 chains in PDB entry 8XYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 252
B
 LYS 3ILE 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8XYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 15Right-handed alpha
Helix 2
AA2
A
28 41Right-handed alpha
Helix 3
AA3
A
50 57Right-handed 310
Helix 4
AA4
A
143 148Right-handed alpha
Helix 5
AA5
A
149 152Right-handed 310
Helix 6
AA6
A
236 240Right-handed 310
Helix 7
AA7
B
34 36Right-handed 310
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There are 4 sheets in PDB entry 8XYF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
131 135anti-parallel
Strand 3
A
79 82anti-parallel
Strand 4
A
89 96anti-parallel
Strand 5
A
101 105anti-parallel
Strand 6
A
120 124anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
164 174anti-parallel
Strand 3
A
201 210anti-parallel
Strand 4
A
213 220anti-parallel
Strand 5
A
223 231anti-parallel
Strand 6
A
179 183anti-parallel
Strand 7
A
193 196anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
164 174anti-parallel
Strand 3
A
247 250anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 12first strand
Strand 2
B
17 22anti-parallel
Strand 3
B
29 32anti-parallel
Strand 4
B
60 68parallel
Strand 5
B
49 57anti-parallel
Strand 6
B
4 12anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il