Analysis of interatomic Contacts of Structural Units in PDB entry:
8XYG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XYG entry

There are 3 chains in PDB entry 8XYG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 18TYR 613
B
 ASN 334CYS 525
C
 SER 19TRP 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 70 helices in PDB entry 8XYG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 52Right-handed alpha
Helix 2
AA2
A
55 82Right-handed alpha
Helix 3
AA3
A
84 88Right-handed 310
Helix 4
AA4
A
90 102Right-handed alpha
Helix 5
AA5
A
103 108Right-handed 310
Helix 6
AA6
A
109 129Right-handed alpha
Helix 7
AA7
A
146 155Right-handed alpha
Helix 8
AA8
A
157 172Right-handed alpha
Helix 9
AA9
A
172 194Right-handed alpha
Helix 10
AB1
A
198 205Right-handed alpha
Helix 11
AB2
A
206 208Right-handed 310
Helix 12
AB3
A
220 252Right-handed alpha
Helix 13
AB4
A
278 283Right-handed alpha
Helix 14
AB5
A
293 299Right-handed alpha
Helix 15
AB6
A
303 318Right-handed alpha
Helix 16
AB7
A
324 331Right-handed alpha
Helix 17
AB8
A
365 385Right-handed alpha
Helix 18
AB9
A
389 393Right-handed 310
Helix 19
AC1
A
399 414Right-handed alpha
Helix 20
AC2
A
414 422Right-handed alpha
Helix 21
AC3
A
431 466Right-handed alpha
Helix 22
AC4
A
469 471Right-handed 310
Helix 23
AC5
A
472 484Right-handed alpha
Helix 24
AC6
A
499 502Right-handed 310
Helix 25
AC7
A
503 508Right-handed alpha
Helix 26
AC8
A
513 533Right-handed alpha
Helix 27
AC9
A
538 542Right-handed 310
Helix 28
AD1
A
547 559Right-handed alpha
Helix 29
AD2
A
565 574Right-handed alpha
Helix 30
AD3
A
581 599Right-handed alpha
Helix 31
AD4
B
365 369Right-handed 310
Helix 32
AD5
B
405 410Right-handed 310
Helix 33
AD6
B
416 421Right-handed alpha
Helix 34
AD7
B
502 505Right-handed 310
Helix 35
AD8
C
20 53Right-handed alpha
Helix 36
AD9
C
55 81Right-handed alpha
Helix 37
AE1
C
82 83Right-handed 310
Helix 38
AE2
C
84 88Right-handed 310
Helix 39
AE3
C
90 102Right-handed alpha
Helix 40
AE4
C
103 108Right-handed 310
Helix 41
AE5
C
109 129Right-handed alpha
Helix 42
AE6
C
146 155Right-handed alpha
Helix 43
AE7
C
157 172Right-handed alpha
Helix 44
AE8
C
172 194Right-handed alpha
Helix 45
AE9
C
198 205Right-handed alpha
Helix 46
AF1
C
206 208Right-handed 310
Helix 47
AF2
C
220 252Right-handed alpha
Helix 48
AF3
C
265 267Right-handed 310
Helix 49
AF4
C
275 279Right-handed 310
Helix 50
AF5
C
293 300Right-handed alpha
Helix 51
AF6
C
303 318Right-handed alpha
Helix 52
AF7
C
324 331Right-handed alpha
Helix 53
AF8
C
336 340Right-handed 310
Helix 54
AF9
C
365 386Right-handed alpha
Helix 55
AG1
C
399 414Right-handed alpha
Helix 56
AG2
C
414 421Right-handed alpha
Helix 57
AG3
C
431 447Right-handed alpha
Helix 58
AG4
C
449 466Right-handed alpha
Helix 59
AG5
C
469 471Right-handed 310
Helix 60
AG6
C
472 484Right-handed alpha
Helix 61
AG7
C
499 502Right-handed 310
Helix 62
AG8
C
503 508Right-handed alpha
Helix 63
AG9
C
512 533Right-handed alpha
Helix 64
AH1
C
538 542Right-handed 310
Helix 65
AH2
C
547 559Right-handed alpha
Helix 66
AH3
C
565 574Right-handed alpha
Helix 67
AH4
C
581 600Right-handed alpha
Helix 68
AH5
D
337 343Right-handed alpha
Helix 69
AH6
D
349 353Right-handed 310
Helix 70
AH7
D
404 408Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 8XYG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
141 143anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 359anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 357first strand
Strand 2
B
396 403anti-parallel
Strand 3
B
507 513anti-parallel
Strand 4
B
433 437anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 454first strand
Strand 2
B
492 494anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
473 474first strand
Strand 2
B
488 489anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 133first strand
Strand 2
C
141 143anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
262 263first strand
Strand 2
C
487 488parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
347 350first strand
Strand 2
C
356 359anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
376 377first strand
Strand 2
D
434 437anti-parallel
Strand 3
D
507 512anti-parallel
Strand 4
D
398 403anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
452 454first strand
Strand 2
D
492 494anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
473 474first strand
Strand 2
D
488 489anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il