Analysis of interatomic Contacts of Structural Units in PDB entry:
8XYM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XYM entry

There are 3 chains in PDB entry 8XYM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 17	PRO 1136
B	ASN 17	VAL 1133
C	ASN 17	PRO 1136

There are 71 helices in PDB entry 8XYM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	294	304	Right-handed alpha
Helix 2	AA2	A	337	343	Right-handed alpha
Helix 3	AA3	A	364	370	Right-handed 310
Helix 4	AA4	A	383	387	Right-handed 310
Helix 5	AA5	A	405	410	Right-handed 310
Helix 6	AA6	A	416	422	Right-handed alpha
Helix 7	AA7	A	438	443	Right-handed alpha
Helix 8	AA8	A	502	505	Right-handed 310
Helix 9	AA9	A	733	739	Right-handed alpha
Helix 10	AB1	A	748	751	Right-handed 310
Helix 11	AB2	A	752	779	Right-handed alpha
Helix 12	AB3	A	807	811	Right-handed 310
Helix 13	AB4	A	812	822	Right-handed alpha
Helix 14	AB5	A	832	839	Right-handed alpha
Helix 15	AB6	A	844	851	Right-handed alpha
Helix 16	AB7	A	862	880	Right-handed alpha
Helix 17	AB8	A	882	886	Right-handed 310
Helix 18	AB9	A	893	906	Right-handed alpha
Helix 19	AC1	A	908	914	Right-handed alpha
Helix 20	AC2	A	915	937	Right-handed alpha
Helix 21	AC3	A	941	961	Right-handed alpha
Helix 22	AC4	A	962	964	Right-handed 310
Helix 23	AC5	A	972	980	Right-handed alpha
Helix 24	AC6	A	981	1029	Right-handed alpha
Helix 25	AC7	B	294	304	Right-handed alpha
Helix 26	AC8	B	337	342	Right-handed alpha
Helix 27	AC9	B	364	369	Right-handed 310
Helix 28	AD1	B	383	389	Right-handed 310
Helix 29	AD2	B	403	410	Right-handed 310
Helix 30	AD3	B	416	422	Right-handed alpha
Helix 31	AD4	B	438	443	Right-handed alpha
Helix 32	AD5	B	502	506	Right-handed 310
Helix 33	AD6	B	733	739	Right-handed alpha
Helix 34	AD7	B	748	751	Right-handed 310
Helix 35	AD8	B	752	779	Right-handed alpha
Helix 36	AD9	B	807	811	Right-handed 310
Helix 37	AE1	B	812	822	Right-handed alpha
Helix 38	AE2	B	832	839	Right-handed alpha
Helix 39	AE3	B	844	851	Right-handed alpha
Helix 40	AE4	B	862	881	Right-handed alpha
Helix 41	AE5	B	882	886	Right-handed 310
Helix 42	AE6	B	893	906	Right-handed alpha
Helix 43	AE7	B	909	915	Right-handed alpha
Helix 44	AE8	B	915	937	Right-handed alpha
Helix 45	AE9	B	941	961	Right-handed alpha
Helix 46	AF1	B	962	964	Right-handed 310
Helix 47	AF2	B	972	980	Right-handed alpha
Helix 48	AF3	B	981	1029	Right-handed alpha
Helix 49	AF4	C	294	304	Right-handed alpha
Helix 50	AF5	C	364	371	Right-handed 310
Helix 51	AF6	C	383	387	Right-handed 310
Helix 52	AF7	C	405	410	Right-handed 310
Helix 53	AF8	C	416	422	Right-handed alpha
Helix 54	AF9	C	438	443	Right-handed alpha
Helix 55	AG1	C	502	505	Right-handed 310
Helix 56	AG2	C	733	739	Right-handed alpha
Helix 57	AG3	C	748	751	Right-handed 310
Helix 58	AG4	C	752	779	Right-handed alpha
Helix 59	AG5	C	807	811	Right-handed 310
Helix 60	AG6	C	812	822	Right-handed alpha
Helix 61	AG7	C	832	839	Right-handed alpha
Helix 62	AG8	C	844	851	Right-handed alpha
Helix 63	AG9	C	862	880	Right-handed alpha
Helix 64	AH1	C	882	886	Right-handed 310
Helix 65	AH2	C	893	906	Right-handed alpha
Helix 66	AH3	C	909	914	Right-handed alpha
Helix 67	AH4	C	915	937	Right-handed alpha
Helix 68	AH5	C	941	961	Right-handed alpha
Helix 69	AH6	C	962	964	Right-handed 310
Helix 70	AH7	C	972	980	Right-handed alpha
Helix 71	AH8	C	981	1029	Right-handed alpha

There are 48 sheets in PDB entry 8XYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	61	66	anti-parallel
Strand 3	A	263	269	anti-parallel
Strand 4	A	90	96	anti-parallel
Strand 5	A	186	197	anti-parallel
Strand 6	A	200	212	anti-parallel
Strand 7	A	225	229	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	55	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	237	246	anti-parallel
Strand 3	A	133	144	parallel
Strand 4	A	156	163	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	237	246	anti-parallel
Strand 3	A	101	107	anti-parallel
Strand 4	A	116	121	anti-parallel
Strand 5	A	126	131	anti-parallel
Strand 6	A	168	171	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	328	first strand
Strand 2	A	539	543	parallel
Strand 3	A	546	554	anti-parallel
Strand 4	A	584	588	anti-parallel
Strand 5	A	573	577	anti-parallel
Strand 6	A	565	567	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	357	first strand
Strand 2	A	396	403	anti-parallel
Strand 3	A	507	514	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	379	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	524	525	parallel
Strand 3	A	391	392	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	598	first strand
Strand 2	A	609	612	anti-parallel
Strand 3	A	648	651	anti-parallel
Strand 4	A	642	645	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	687	692	parallel
Strand 3	A	670	675	anti-parallel
Strand 4	A	664	665	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	724	first strand
Strand 2	A	1055	1071	anti-parallel
Strand 3	A	1043	1052	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	729	732	first strand
Strand 2	A	854	857	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	783	785	first strand
Strand 2	C	697	699	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1116	1121	first strand
Strand 2	A	1082	1086	anti-parallel
Strand 3	A	1077	1079	anti-parallel
Strand 4	A	1129	1130	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1090	1093	first strand
Strand 2	A	1098	1101	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	29	first strand
Strand 2	B	62	68	anti-parallel
Strand 3	B	262	269	anti-parallel
Strand 4	B	90	96	anti-parallel
Strand 5	B	188	197	anti-parallel
Strand 6	B	200	208	anti-parallel
Strand 7	B	225	229	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	237	246	anti-parallel
Strand 3	B	133	144	parallel
Strand 4	B	156	163	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	237	246	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	116	121	anti-parallel
Strand 5	B	126	131	anti-parallel
Strand 6	B	168	171	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	328	first strand
Strand 2	B	539	543	parallel
Strand 3	B	546	554	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	573	577	anti-parallel
Strand 6	B	565	567	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	357	first strand
Strand 2	B	396	402	anti-parallel
Strand 3	B	508	514	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	379	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	362	first strand
Strand 2	B	524	525	parallel
Strand 3	B	391	392	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	598	first strand
Strand 2	B	609	613	anti-parallel
Strand 3	B	648	651	anti-parallel
Strand 4	B	642	645	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	687	692	parallel
Strand 3	B	670	675	anti-parallel
Strand 4	B	664	665	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	698	699	first strand
Strand 2	C	784	785	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	724	first strand
Strand 2	B	1055	1073	anti-parallel
Strand 3	B	1043	1052	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	724	first strand
Strand 2	B	1055	1073	anti-parallel
Strand 3	B	1090	1093	anti-parallel
Strand 4	B	1098	1101	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	732	first strand
Strand 2	B	854	857	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1116	1118	first strand
Strand 2	B	1083	1086	anti-parallel
Strand 3	B	1077	1078	anti-parallel
Strand 4	B	1129	1130	parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	31	first strand
Strand 2	C	60	68	anti-parallel
Strand 3	C	262	269	anti-parallel
Strand 4	C	90	96	anti-parallel
Strand 5	C	186	197	anti-parallel
Strand 6	C	200	212	anti-parallel
Strand 7	C	225	229	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	55	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	244	anti-parallel
Strand 3	C	101	107	anti-parallel
Strand 4	C	116	121	anti-parallel
Strand 5	C	126	142	anti-parallel
Strand 6	C	156	171	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	244	anti-parallel
Strand 3	C	126	142	parallel
Strand 4	C	156	171	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	328	first strand
Strand 2	C	538	543	parallel
Strand 3	C	546	554	anti-parallel
Strand 4	C	584	588	anti-parallel
Strand 5	C	573	577	anti-parallel
Strand 6	C	565	567	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	357	first strand
Strand 2	C	396	403	anti-parallel
Strand 3	C	507	514	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	376	379	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	524	525	parallel
Strand 3	C	391	392	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	594	598	first strand
Strand 2	C	609	613	anti-parallel
Strand 3	C	648	651	anti-parallel
Strand 4	C	642	645	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	655	first strand
Strand 2	C	687	692	parallel
Strand 3	C	670	675	anti-parallel
Strand 4	C	664	665	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	707	724	first strand
Strand 2	C	1055	1073	anti-parallel
Strand 3	C	1043	1052	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	707	724	first strand
Strand 2	C	1055	1073	anti-parallel
Strand 3	C	1090	1093	anti-parallel
Strand 4	C	1098	1101	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	729	732	first strand
Strand 2	C	854	857	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1077	1078	first strand
Strand 2	C	1129	1130	parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1084	1086	first strand
Strand 2	C	1116	1118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XYM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XYM