Analysis of interatomic Contacts of Structural Units in PDB entry:
8XYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XYP entry

There are 4 chains in PDB entry 8XYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 136LEU 372
B
 GLY 45GLU 324
C
 THR 152GLU 183
D
 PRO 11LYS 137
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8XYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
136 167Right-handed alpha
Helix 2
AA2
A
187 200Right-handed alpha
Helix 3
AA3
A
231 237Right-handed alpha
Helix 4
AA4
A
239 244Right-handed alpha
Helix 5
AA5
A
254 257Right-handed 310
Helix 6
AA6
A
258 268Right-handed alpha
Helix 7
AA7
A
336 346Right-handed alpha
Helix 8
AA8
A
357 361Right-handed 310
Helix 9
AA9
B
47 53Right-handed alpha
Helix 10
AB1
B
54 59Right-handed 310
Helix 11
AB2
B
67 71Right-handed 310
Helix 12
AB3
B
110 117Right-handed alpha
Helix 13
AB4
B
137 148Right-handed alpha
Helix 14
AB5
B
163 174Right-handed alpha
Helix 15
AB6
B
201 209Right-handed alpha
Helix 16
AB7
B
216 220Right-handed 310
Helix 17
AB8
B
272 287Right-handed alpha
Helix 18
AB9
C
162 183Right-handed alpha
Helix 19
AC1
D
13 25Right-handed alpha
Helix 20
AC2
D
38 43Right-handed alpha
Helix 21
AC3
D
51 65Right-handed alpha
Helix 22
AC4
D
69 78Right-handed alpha
Helix 23
AC5
D
83 96Right-handed alpha
Helix 24
AC6
D
109 128Right-handed alpha
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There are 2 sheets in PDB entry 8XYP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
365 369parallel
Strand 3
A
351 354parallel
Strand 4
A
205 208parallel
Strand 5
A
247 253parallel
Strand 6
A
299 307anti-parallel
Strand 7
A
271 281anti-parallel
Strand 8
A
323 327parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 76first strand
Strand 2
B
318 322parallel
Strand 3
B
302 305parallel
Strand 4
B
93 96parallel
Strand 5
B
127 133parallel
Strand 6
B
233 241anti-parallel
Strand 7
B
151 162anti-parallel
Strand 8
B
258 263parallel
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