Analysis of interatomic Contacts of Structural Units in PDB entry:
8XZ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XZ9 entry

There are 5 chains in PDB entry 8XZ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 19	ASP 614
B	THR 23	GLU 1144
C	THR 23	GLU 1144
D	THR 23	GLU 1144
E	SER 19	ASP 614

There are116 helices in PDB entry 8XZ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	53	Right-handed alpha
Helix 2	AA2	A	55	81	Right-handed alpha
Helix 3	AA3	A	90	101	Right-handed alpha
Helix 4	AA4	A	103	108	Right-handed 310
Helix 5	AA5	A	109	130	Right-handed alpha
Helix 6	AA6	A	146	154	Right-handed alpha
Helix 7	AA7	A	156	193	Right-handed alpha
Helix 8	AA8	A	197	204	Right-handed alpha
Helix 9	AA9	A	205	207	Right-handed 310
Helix 10	AB1	A	217	251	Right-handed alpha
Helix 11	AB2	A	264	266	Right-handed 310
Helix 12	AB3	A	292	300	Right-handed alpha
Helix 13	AB4	A	302	317	Right-handed alpha
Helix 14	AB5	A	323	330	Right-handed alpha
Helix 15	AB6	A	364	384	Right-handed alpha
Helix 16	AB7	A	398	413	Right-handed alpha
Helix 17	AB8	A	413	421	Right-handed alpha
Helix 18	AB9	A	430	447	Right-handed alpha
Helix 19	AC1	A	447	465	Right-handed alpha
Helix 20	AC2	A	472	484	Right-handed alpha
Helix 21	AC3	A	497	501	Right-handed 310
Helix 22	AC4	A	511	532	Right-handed alpha
Helix 23	AC5	A	546	558	Right-handed alpha
Helix 24	AC6	A	559	563	Right-handed 310
Helix 25	AC7	A	564	573	Right-handed alpha
Helix 26	AC8	A	580	587	Right-handed alpha
Helix 27	AC9	A	587	598	Right-handed alpha
Helix 28	AD1	A	599	601	Right-handed 310
Helix 29	AD2	B	294	304	Right-handed alpha
Helix 30	AD3	B	365	370	Right-handed alpha
Helix 31	AD4	B	403	410	Right-handed alpha
Helix 32	AD5	B	416	422	Right-handed alpha
Helix 33	AD6	B	616	627	Right-handed alpha
Helix 34	AD7	B	737	743	Right-handed alpha
Helix 35	AD8	B	746	754	Right-handed alpha
Helix 36	AD9	B	755	757	Right-handed 310
Helix 37	AE1	B	759	783	Right-handed alpha
Helix 38	AE2	B	816	825	Right-handed alpha
Helix 39	AE3	B	848	856	Right-handed alpha
Helix 40	AE4	B	866	884	Right-handed alpha
Helix 41	AE5	B	886	891	Right-handed alpha
Helix 42	AE6	B	897	910	Right-handed alpha
Helix 43	AE7	B	913	918	Right-handed alpha
Helix 44	AE8	B	919	941	Right-handed alpha
Helix 45	AE9	B	945	965	Right-handed alpha
Helix 46	AF1	B	966	968	Right-handed 310
Helix 47	AF2	B	976	984	Right-handed alpha
Helix 48	AF3	B	985	1033	Right-handed alpha
Helix 49	AF4	B	1139	1144	Right-handed alpha
Helix 50	AF5	C	294	304	Right-handed alpha
Helix 51	AF6	C	366	371	Right-handed alpha
Helix 52	AF7	C	403	410	Right-handed alpha
Helix 53	AF8	C	543	546	Right-handed 310
Helix 54	AF9	C	616	627	Right-handed alpha
Helix 55	AG1	C	737	743	Right-handed alpha
Helix 56	AG2	C	746	755	Right-handed alpha
Helix 57	AG3	C	760	783	Right-handed alpha
Helix 58	AG4	C	816	826	Right-handed alpha
Helix 59	AG5	C	848	857	Right-handed alpha
Helix 60	AG6	C	866	884	Right-handed alpha
Helix 61	AG7	C	886	891	Right-handed alpha
Helix 62	AG8	C	897	910	Right-handed alpha
Helix 63	AG9	C	912	919	Right-handed alpha
Helix 64	AH1	C	919	941	Right-handed alpha
Helix 65	AH2	C	945	965	Right-handed alpha
Helix 66	AH3	C	966	968	Right-handed 310
Helix 67	AH4	C	976	984	Right-handed alpha
Helix 68	AH5	C	985	1033	Right-handed alpha
Helix 69	AH6	C	1139	1144	Right-handed alpha
Helix 70	AH7	D	294	304	Right-handed alpha
Helix 71	AH8	D	337	343	Right-handed alpha
Helix 72	AH9	D	365	372	Right-handed 310
Helix 73	AI1	D	417	422	Right-handed alpha
Helix 74	AI2	D	616	627	Right-handed alpha
Helix 75	AI3	D	737	743	Right-handed alpha
Helix 76	AI4	D	746	754	Right-handed alpha
Helix 77	AI5	D	755	757	Right-handed 310
Helix 78	AI6	D	759	783	Right-handed alpha
Helix 79	AI7	D	816	825	Right-handed alpha
Helix 80	AI8	D	848	854	Right-handed alpha
Helix 81	AI9	D	866	885	Right-handed alpha
Helix 82	AJ1	D	886	890	Right-handed 310
Helix 83	AJ2	D	897	908	Right-handed alpha
Helix 84	AJ3	D	913	919	Right-handed alpha
Helix 85	AJ4	D	923	941	Right-handed alpha
Helix 86	AJ5	D	945	965	Right-handed alpha
Helix 87	AJ6	D	966	968	Right-handed 310
Helix 88	AJ7	D	976	984	Right-handed alpha
Helix 89	AJ8	D	985	1033	Right-handed alpha
Helix 90	AJ9	E	20	52	Right-handed alpha
Helix 91	AK1	E	55	81	Right-handed alpha
Helix 92	AK2	E	90	101	Right-handed alpha
Helix 93	AK3	E	103	108	Right-handed 310
Helix 94	AK4	E	109	129	Right-handed alpha
Helix 95	AK5	E	146	154	Right-handed alpha
Helix 96	AK6	E	156	193	Right-handed alpha
Helix 97	AK7	E	197	204	Right-handed alpha
Helix 98	AK8	E	218	251	Right-handed alpha
Helix 99	AK9	E	277	282	Right-handed alpha
Helix 100	AL1	E	292	300	Right-handed alpha
Helix 101	AL2	E	302	316	Right-handed alpha
Helix 102	AL3	E	323	330	Right-handed alpha
Helix 103	AL4	E	364	373	Right-handed alpha
Helix 104	AL5	E	376	384	Right-handed alpha
Helix 105	AL6	E	398	413	Right-handed alpha
Helix 106	AL7	E	413	420	Right-handed alpha
Helix 107	AL8	E	430	446	Right-handed alpha
Helix 108	AL9	E	447	465	Right-handed alpha
Helix 109	AM1	E	472	483	Right-handed alpha
Helix 110	AM2	E	497	501	Right-handed 310
Helix 111	AM3	E	502	507	Right-handed alpha
Helix 112	AM4	E	512	533	Right-handed alpha
Helix 113	AM5	E	546	560	Right-handed alpha
Helix 114	AM6	E	564	571	Right-handed alpha
Helix 115	AM7	E	580	587	Right-handed alpha
Helix 116	AM8	E	587	597	Right-handed alpha

There are 50 sheets in PDB entry 8XZ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	133	first strand
Strand 2	A	140	142	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	262	first strand
Strand 2	A	486	487	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	351	first strand
Strand 2	A	354	355	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	B	61	64	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	54	first strand
Strand 2	B	272	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	240	anti-parallel
Strand 3	B	104	107	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	192	197	anti-parallel
Strand 3	B	200	205	anti-parallel
Strand 4	B	224	225	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	316	first strand
Strand 2	B	594	599	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	642	643	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	325	first strand
Strand 2	B	538	543	parallel
Strand 3	B	546	551	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	402	first strand
Strand 2	B	508	515	anti-parallel
Strand 3	B	430	437	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	566	first strand
Strand 2	C	42	43	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	660	first strand
Strand 2	B	691	697	parallel
Strand 3	B	670	675	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	713	715	first strand
Strand 2	B	1072	1074	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	718	728	first strand
Strand 2	B	1059	1069	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	733	734	first strand
Strand 2	B	860	861	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1077	1078	first strand
Strand 2	B	1094	1097	anti-parallel
Strand 3	B	1102	1105	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1122	first strand
Strand 2	B	1087	1090	anti-parallel
Strand 3	B	1081	1082	anti-parallel
Strand 4	B	1133	1134	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	61	65	anti-parallel
Strand 3	C	264	269	anti-parallel
Strand 4	C	90	96	anti-parallel
Strand 5	C	188	195	anti-parallel
Strand 6	C	201	207	anti-parallel
Strand 7	C	224	229	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	55	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	240	anti-parallel
Strand 3	C	104	105	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	C	129	131	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	316	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	609	613	anti-parallel
Strand 4	C	648	651	anti-parallel
Strand 5	C	642	645	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	326	first strand
Strand 2	C	538	541	parallel
Strand 3	C	548	554	anti-parallel
Strand 4	C	584	588	anti-parallel
Strand 5	C	575	577	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	356	358	first strand
Strand 2	C	395	402	anti-parallel
Strand 3	C	508	515	anti-parallel
Strand 4	C	430	436	anti-parallel
Strand 5	C	374	376	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	655	first strand
Strand 2	C	691	696	parallel
Strand 3	C	670	675	anti-parallel
Strand 4	C	664	665	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	703	704	first strand
Strand 2	D	789	790	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	713	715	first strand
Strand 2	C	1072	1074	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	718	728	first strand
Strand 2	C	1059	1069	anti-parallel
Strand 3	C	1047	1050	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	718	728	first strand
Strand 2	C	1059	1069	anti-parallel
Strand 3	C	1053	1056	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	733	734	first strand
Strand 2	C	860	861	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1122	first strand
Strand 2	C	1087	1090	anti-parallel
Strand 3	C	1081	1082	anti-parallel
Strand 4	C	1133	1134	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1094	1097	first strand
Strand 2	C	1102	1105	anti-parallel
Strand 3	C	1113	1114	anti-parallel

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There are 7 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	30	first strand
Strand 2	D	61	65	anti-parallel
Strand 3	D	264	269	anti-parallel
Strand 4	D	90	95	anti-parallel
Strand 5	D	189	195	anti-parallel
Strand 6	D	201	207	anti-parallel
Strand 7	D	224	229	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	55	first strand
Strand 2	D	271	279	anti-parallel
Strand 3	D	285	289	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	85	first strand
Strand 2	D	237	240	anti-parallel
Strand 3	D	104	107	anti-parallel
Strand 4	D	116	118	anti-parallel
Strand 5	D	128	131	anti-parallel
Strand 6	D	167	170	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	316	first strand
Strand 2	D	595	599	anti-parallel
Strand 3	D	609	612	anti-parallel
Strand 4	D	650	651	anti-parallel
Strand 5	D	642	643	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	324	325	first strand
Strand 2	D	538	543	parallel
Strand 3	D	546	554	anti-parallel
Strand 4	D	584	588	anti-parallel
Strand 5	D	575	577	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	358	first strand
Strand 2	D	395	402	anti-parallel
Strand 3	D	508	515	anti-parallel
Strand 4	D	431	437	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	454	first strand
Strand 2	D	492	494	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	473	474	first strand
Strand 2	D	488	489	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	654	655	first strand
Strand 2	D	691	696	parallel
Strand 3	D	670	675	anti-parallel
Strand 4	D	664	665	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	713	715	first strand
Strand 2	D	1072	1074	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	718	728	first strand
Strand 2	D	1059	1069	anti-parallel
Strand 3	D	1047	1056	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	733	734	first strand
Strand 2	D	860	861	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1120	1122	first strand
Strand 2	D	1087	1090	anti-parallel
Strand 3	D	1081	1082	anti-parallel
Strand 4	D	1133	1134	parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1094	1097	first strand
Strand 2	D	1102	1105	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	133	first strand
Strand 2	E	140	142	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	261	262	first strand
Strand 2	E	486	487	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XZ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XZ9