Analysis of interatomic Contacts of Structural Units in PDB entry:
8XZB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XZB entry

There are 2 chains in PDB entry 8XZB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 19ALA 614
C
 ASN 321CYS 511
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8XZB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 53Right-handed alpha
Helix 2
AA2
A
55 82Right-handed alpha
Helix 3
AA3
A
90 102Right-handed alpha
Helix 4
AA4
A
109 130Right-handed alpha
Helix 5
AA5
A
147 155Right-handed alpha
Helix 6
AA6
A
157 194Right-handed alpha
Helix 7
AA7
A
198 205Right-handed alpha
Helix 8
AA8
A
218 252Right-handed alpha
Helix 9
AA9
A
265 268Right-handed 310
Helix 10
AB1
A
275 277Right-handed 310
Helix 11
AB2
A
278 283Right-handed alpha
Helix 12
AB3
A
293 300Right-handed alpha
Helix 13
AB4
A
303 319Right-handed alpha
Helix 14
AB5
A
324 331Right-handed alpha
Helix 15
AB6
A
365 385Right-handed alpha
Helix 16
AB7
A
397 414Right-handed alpha
Helix 17
AB8
A
414 422Right-handed alpha
Helix 18
AB9
A
431 466Right-handed alpha
Helix 19
AC1
A
469 471Right-handed 310
Helix 20
AC2
A
472 485Right-handed alpha
Helix 21
AC3
A
498 503Right-handed alpha
Helix 22
AC4
A
503 508Right-handed alpha
Helix 23
AC5
A
512 534Right-handed alpha
Helix 24
AC6
A
547 561Right-handed alpha
Helix 25
AC7
A
565 575Right-handed alpha
Helix 26
AC8
A
581 588Right-handed alpha
Helix 27
AC9
A
588 602Right-handed alpha
Helix 28
AD1
C
325 330Right-handed alpha
Helix 29
AD2
C
352 358Right-handed alpha
Helix 30
AD3
C
392 395Right-handed 310
Helix 31
AD4
C
404 409Right-handed alpha
Helix 32
AD5
C
425 430Right-handed alpha
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There are 5 sheets in PDB entry 8XZB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
141 143anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 359anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
341 345first strand
Strand 2
C
380 390anti-parallel
Strand 3
C
493 502anti-parallel
Strand 4
C
419 424anti-parallel
Strand 5
C
363 365anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
439 441first strand
Strand 2
C
478 480anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il