Analysis of interatomic Contacts of Structural Units in PDB entry:
8XZG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XZG entry

There are 5 chains in PDB entry 8XZG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 3	PHE 354
B	SER 2	TRP 339
G	ASN 5	ARG 62
L	ARG 2	PHE 13
R	SER 26	ALA 332

There are 29 helices in PDB entry 8XZG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	30	Right-handed alpha
Helix 2	AA2	A	45	54	Right-handed alpha
Helix 3	AA3	A	207	212	Right-handed alpha
Helix 4	AA4	A	213	216	Right-handed 310
Helix 5	AA5	A	228	232	Right-handed 310
Helix 6	AA6	A	241	255	Right-handed alpha
Helix 7	AA7	A	270	279	Right-handed alpha
Helix 8	AA8	A	282	286	Right-handed 310
Helix 9	AA9	A	295	310	Right-handed alpha
Helix 10	AB1	A	330	351	Right-handed alpha
Helix 11	AB2	B	3	24	Right-handed alpha
Helix 12	AB3	G	6	22	Right-handed alpha
Helix 13	AB4	G	29	44	Right-handed alpha
Helix 14	AB5	G	45	48	Right-handed 310
Helix 15	AB6	R	27	53	Right-handed alpha
Helix 16	AB7	R	65	81	Right-handed alpha
Helix 17	AB8	R	82	90	Right-handed alpha
Helix 18	AB9	R	100	132	Right-handed alpha
Helix 19	AC1	R	137	144	Right-handed alpha
Helix 20	AC2	R	148	161	Right-handed alpha
Helix 21	AC3	R	162	165	Right-handed 310
Helix 22	AC4	R	190	192	Right-handed 310
Helix 23	AC5	R	193	210	Right-handed alpha
Helix 24	AC6	R	210	232	Right-handed alpha
Helix 25	AC7	R	240	275	Right-handed alpha
Helix 26	AC8	R	283	298	Right-handed alpha
Helix 27	AC9	R	300	305	Right-handed alpha
Helix 28	AD1	R	305	310	Right-handed alpha
Helix 29	AD2	R	313	327	Right-handed alpha

There are 9 sheets in PDB entry 8XZG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	190	first strand
Strand 2	A	195	198	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	61	first strand
Strand 2	B	72	74	anti-parallel
Strand 3	B	78	82	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	114	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	166	168	anti-parallel
Strand 4	B	178	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	190	first strand
Strand 2	B	201	203	anti-parallel
Strand 3	B	207	211	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	231	first strand
Strand 2	B	243	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	168	172	first strand
Strand 2	R	179	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XZG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XZG