Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y06


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y06 entry

There are 4 chains in PDB entry 8Y06 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 1227
B
 A -20 G 13
C
 T -11 G 9
D
 C -9 T 1
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8Y06. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
26 35Right-handed alpha
Helix 3
AA3
A
35 69Right-handed alpha
Helix 4
AA4
A
73 83Right-handed alpha
Helix 5
AA5
A
87 111Right-handed alpha
Helix 6
AA6
A
114 119Right-handed alpha
Helix 7
AA7
A
121 126Right-handed alpha
Helix 8
AA8
A
126 132Right-handed alpha
Helix 9
AA9
A
134 143Right-handed alpha
Helix 10
AB1
A
148 150Right-handed 310
Helix 11
AB2
A
151 160Right-handed alpha
Helix 12
AB3
A
161 163Right-handed 310
Helix 13
AB4
A
170 177Right-handed alpha
Helix 14
AB5
A
178 194Right-handed alpha
Helix 15
AB6
A
198 209Right-handed alpha
Helix 16
AB7
A
215 229Right-handed 310
Helix 17
AB8
A
230 243Right-handed alpha
Helix 18
AB9
A
254 266Right-handed alpha
Helix 19
AC1
A
296 309Right-handed alpha
Helix 20
AC2
A
312 327Right-handed alpha
Helix 21
AC3
A
328 331Right-handed 310
Helix 22
AC4
A
341 352Right-handed alpha
Helix 23
AC5
A
356 367Right-handed alpha
Helix 24
AC6
A
378 392Right-handed alpha
Helix 25
AC7
A
397 404Right-handed alpha
Helix 26
AC8
A
409 432Right-handed alpha
Helix 27
AC9
A
433 437Right-handed 310
Helix 28
AD1
A
449 471Right-handed alpha
Helix 29
AD2
A
483 498Right-handed alpha
Helix 30
AD3
A
499 512Right-handed alpha
Helix 31
AD4
A
538 543Right-handed alpha
Helix 32
AD5
A
560 563Right-handed 310
Helix 33
AD6
A
564 569Right-handed alpha
Helix 34
AD7
A
588 599Right-handed alpha
Helix 35
AD8
A
599 606Right-handed alpha
Helix 36
AD9
A
609 619Right-handed alpha
Helix 37
AE1
A
628 646Right-handed alpha
Helix 38
AE2
A
646 651Right-handed alpha
Helix 39
AE3
A
659 663Right-handed 310
Helix 40
AE4
A
665 677Right-handed alpha
Helix 41
AE5
A
687 696Right-handed alpha
Helix 42
AE6
A
706 710Right-handed 310
Helix 43
AE7
A
718 727Right-handed alpha
Helix 44
AE8
A
752 756Right-handed 310
Helix 45
AE9
A
786 790Right-handed 310
Helix 46
AF1
A
811 823Right-handed alpha
Helix 47
AF2
A
872 885Right-handed alpha
Helix 48
AF3
A
889 919Right-handed alpha
Helix 49
AF4
A
939 955Right-handed alpha
Helix 50
AF5
A
1020 1030Right-handed alpha
Helix 51
AF6
A
1050 1052Right-handed 310
Helix 52
AF7
A
1091 1102Right-handed alpha
Helix 53
AF8
A
1111 1118Right-handed alpha
Helix 54
AF9
A
1120 1135Right-handed alpha
Helix 55
AG1
A
1164 1169Right-handed alpha
Helix 56
AG2
A
1178 1199Right-handed alpha
Helix 57
AG3
A
1214 1225Right-handed alpha
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There are 11 sheets in PDB entry 8Y06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 522first strand
Strand 2
A
743 747anti-parallel
Strand 3
A
793 802anti-parallel
Strand 4
A
13 23anti-parallel
Strand 5
A
699 705anti-parallel
Strand 6
A
552 558anti-parallel
Strand 7
A
544 549anti-parallel
Strand 8
A
577 585anti-parallel
Strand 9
A
678 686anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 522first strand
Strand 2
A
743 747anti-parallel
Strand 3
A
793 802anti-parallel
Strand 4
A
736 738anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
251 252anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
394 396anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
758 759first strand
Strand 2
A
783 784anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
765 766first strand
Strand 2
A
776 777anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
850 855first strand
Strand 2
A
840 844anti-parallel
Strand 3
A
828 832anti-parallel
Strand 4
A
921 925parallel
Strand 5
A
993 996parallel
Strand 6
A
989 990anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
858 863first strand
Strand 2
A
866 871anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1033 1037first strand
Strand 2
A
1042 1048anti-parallel
Strand 3
A
1062 1066anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1070 1073first strand
Strand 2
A
1087 1090anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1151 1155first strand
Strand 2
A
1161 1163anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il