Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y09 entry

There are 8 chains in PDB entry 8Y09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 1226
B
 A -20 G 13
C
 C -13 G 9
D
 C -9 T 1
E
 MET 1VAL 1226
F
 A -20 G 13
G
 C -13 G 9
H
 C -9 T 1
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are117 helices in PDB entry 8Y09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed 310
Helix 2
AA2
A
26 34Right-handed alpha
Helix 3
AA3
A
35 69Right-handed alpha
Helix 4
AA4
A
73 83Right-handed alpha
Helix 5
AA5
A
87 112Right-handed alpha
Helix 6
AA6
A
113 118Right-handed 310
Helix 7
AA7
A
120 126Right-handed alpha
Helix 8
AA8
A
126 132Right-handed alpha
Helix 9
AA9
A
134 143Right-handed alpha
Helix 10
AB1
A
147 150Right-handed 310
Helix 11
AB2
A
151 160Right-handed alpha
Helix 12
AB3
A
161 163Right-handed 310
Helix 13
AB4
A
170 177Right-handed alpha
Helix 14
AB5
A
178 194Right-handed alpha
Helix 15
AB6
A
195 197Right-handed 310
Helix 16
AB7
A
198 209Right-handed alpha
Helix 17
AB8
A
215 229Right-handed 310
Helix 18
AB9
A
230 243Right-handed alpha
Helix 19
AC1
A
254 266Right-handed alpha
Helix 20
AC2
A
297 309Right-handed alpha
Helix 21
AC3
A
312 327Right-handed alpha
Helix 22
AC4
A
328 331Right-handed 310
Helix 23
AC5
A
343 352Right-handed alpha
Helix 24
AC6
A
356 371Right-handed alpha
Helix 25
AC7
A
380 392Right-handed alpha
Helix 26
AC8
A
397 404Right-handed alpha
Helix 27
AC9
A
409 432Right-handed alpha
Helix 28
AD1
A
432 437Right-handed alpha
Helix 29
AD2
A
449 472Right-handed alpha
Helix 30
AD3
A
483 498Right-handed alpha
Helix 31
AD4
A
499 512Right-handed alpha
Helix 32
AD5
A
535 537Right-handed 310
Helix 33
AD6
A
538 543Right-handed alpha
Helix 34
AD7
A
588 598Right-handed alpha
Helix 35
AD8
A
609 619Right-handed alpha
Helix 36
AD9
A
628 645Right-handed alpha
Helix 37
AE1
A
646 651Right-handed alpha
Helix 38
AE2
A
659 663Right-handed 310
Helix 39
AE3
A
665 677Right-handed alpha
Helix 40
AE4
A
687 696Right-handed alpha
Helix 41
AE5
A
706 710Right-handed 310
Helix 42
AE6
A
718 728Right-handed alpha
Helix 43
AE7
A
752 756Right-handed 310
Helix 44
AE8
A
786 790Right-handed 310
Helix 45
AE9
A
811 822Right-handed alpha
Helix 46
AF1
A
872 890Right-handed alpha
Helix 47
AF2
A
896 919Right-handed alpha
Helix 48
AF3
A
933 954Right-handed alpha
Helix 49
AF4
A
1020 1031Right-handed alpha
Helix 50
AF5
A
1038 1041Right-handed 310
Helix 51
AF6
A
1050 1052Right-handed 310
Helix 52
AF7
A
1091 1102Right-handed alpha
Helix 53
AF8
A
1111 1118Right-handed alpha
Helix 54
AF9
A
1120 1136Right-handed alpha
Helix 55
AG1
A
1163 1169Right-handed alpha
Helix 56
AG2
A
1178 1201Right-handed alpha
Helix 57
AG3
A
1202 1209Right-handed 310
Helix 58
AG4
A
1214 1225Right-handed alpha
Helix 59
AG5
E
3 7Right-handed 310
Helix 60
AG6
E
26 34Right-handed alpha
Helix 61
AG7
E
35 69Right-handed alpha
Helix 62
AG8
E
73 83Right-handed alpha
Helix 63
AG9
E
87 112Right-handed alpha
Helix 64
AH1
E
113 118Right-handed 310
Helix 65
AH2
E
120 126Right-handed alpha
Helix 66
AH3
E
126 132Right-handed alpha
Helix 67
AH4
E
134 143Right-handed alpha
Helix 68
AH5
E
147 150Right-handed 310
Helix 69
AH6
E
151 160Right-handed alpha
Helix 70
AH7
E
161 163Right-handed 310
Helix 71
AH8
E
170 176Right-handed alpha
Helix 72
AH9
E
178 194Right-handed alpha
Helix 73
AI1
E
195 197Right-handed 310
Helix 74
AI2
E
198 211Right-handed alpha
Helix 75
AI3
E
217 229Right-handed 310
Helix 76
AI4
E
230 243Right-handed alpha
Helix 77
AI5
E
254 267Right-handed alpha
Helix 78
AI6
E
296 309Right-handed alpha
Helix 79
AI7
E
312 327Right-handed alpha
Helix 80
AI8
E
328 331Right-handed 310
Helix 81
AI9
E
343 352Right-handed alpha
Helix 82
AJ1
E
356 371Right-handed alpha
Helix 83
AJ2
E
384 392Right-handed alpha
Helix 84
AJ3
E
397 404Right-handed alpha
Helix 85
AJ4
E
409 432Right-handed alpha
Helix 86
AJ5
E
432 437Right-handed alpha
Helix 87
AJ6
E
449 472Right-handed alpha
Helix 88
AJ7
E
473 475Right-handed 310
Helix 89
AJ8
E
483 498Right-handed alpha
Helix 90
AJ9
E
499 512Right-handed alpha
Helix 91
AK1
E
535 537Right-handed 310
Helix 92
AK2
E
538 543Right-handed alpha
Helix 93
AK3
E
560 563Right-handed 310
Helix 94
AK4
E
588 598Right-handed alpha
Helix 95
AK5
E
609 619Right-handed alpha
Helix 96
AK6
E
628 645Right-handed alpha
Helix 97
AK7
E
646 651Right-handed alpha
Helix 98
AK8
E
659 663Right-handed 310
Helix 99
AK9
E
665 677Right-handed alpha
Helix 100
AL1
E
687 696Right-handed alpha
Helix 101
AL2
E
706 710Right-handed 310
Helix 102
AL3
E
718 728Right-handed alpha
Helix 103
AL4
E
752 756Right-handed 310
Helix 104
AL5
E
786 790Right-handed 310
Helix 105
AL6
E
811 822Right-handed alpha
Helix 106
AL7
E
872 890Right-handed alpha
Helix 107
AL8
E
896 919Right-handed alpha
Helix 108
AL9
E
933 954Right-handed alpha
Helix 109
AM1
E
1020 1031Right-handed alpha
Helix 110
AM2
E
1050 1052Right-handed 310
Helix 111
AM3
E
1091 1102Right-handed alpha
Helix 112
AM4
E
1111 1118Right-handed alpha
Helix 113
AM5
E
1120 1136Right-handed alpha
Helix 114
AM6
E
1164 1169Right-handed alpha
Helix 115
AM7
E
1178 1201Right-handed alpha
Helix 116
AM8
E
1202 1209Right-handed 310
Helix 117
AM9
E
1214 1225Right-handed alpha
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There are 21 sheets in PDB entry 8Y09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 522first strand
Strand 2
A
743 747anti-parallel
Strand 3
A
793 802anti-parallel
Strand 4
A
13 23anti-parallel
Strand 5
A
699 705anti-parallel
Strand 6
A
552 558anti-parallel
Strand 7
A
544 549anti-parallel
Strand 8
A
577 585anti-parallel
Strand 9
A
678 686anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 522first strand
Strand 2
A
743 747anti-parallel
Strand 3
A
793 802anti-parallel
Strand 4
A
736 738anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
251 252anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
394 396anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
758 759first strand
Strand 2
A
783 784anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
765 766first strand
Strand 2
A
776 777anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
850 855first strand
Strand 2
A
840 844anti-parallel
Strand 3
A
828 832anti-parallel
Strand 4
A
921 925parallel
Strand 5
A
993 996parallel
Strand 6
A
989 990anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
858 863first strand
Strand 2
A
866 871anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1033 1037first strand
Strand 2
A
1042 1048anti-parallel
Strand 3
A
1062 1066anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1070 1074first strand
Strand 2
A
1086 1090anti-parallel
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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
521 522first strand
Strand 2
E
743 747anti-parallel
Strand 3
E
793 802anti-parallel
Strand 4
E
13 23anti-parallel
Strand 5
E
699 705anti-parallel
Strand 6
E
552 558anti-parallel
Strand 7
E
544 549anti-parallel
Strand 8
E
577 585anti-parallel
Strand 9
E
678 686anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
521 522first strand
Strand 2
E
743 747anti-parallel
Strand 3
E
793 802anti-parallel
Strand 4
E
736 738anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
337 339first strand
Strand 2
E
394 396anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
758 759first strand
Strand 2
E
783 784anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
765 766first strand
Strand 2
E
776 777anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
850 855first strand
Strand 2
E
840 844anti-parallel
Strand 3
E
828 832anti-parallel
Strand 4
E
921 925parallel
Strand 5
E
993 996parallel
Strand 6
E
989 990anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
858 863first strand
Strand 2
E
866 871anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1033 1037first strand
Strand 2
E
1042 1048anti-parallel
Strand 3
E
1062 1066anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1070 1071first strand
Strand 2
E
1089 1090anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1074 1075first strand
Strand 2
E
1085 1086anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1151 1155first strand
Strand 2
E
1161 1163anti-parallel
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