Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y0B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y0B entry

There are 4 chains in PDB entry 8Y0B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 A -19 C 36
C
 A -11 T 9
D
 A -9 A 3
A
 MET 1ASN 1300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 57 helices in PDB entry 8Y0B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 34Right-handed alpha
Helix 2
AA2
A
35 69Right-handed alpha
Helix 3
AA3
A
72 87Right-handed alpha
Helix 4
AA4
A
91 116Right-handed alpha
Helix 5
AA5
A
118 122Right-handed 310
Helix 6
AA6
A
136 148Right-handed alpha
Helix 7
AA7
A
161 171Right-handed alpha
Helix 8
AA8
A
175 178Right-handed 310
Helix 9
AA9
A
179 191Right-handed alpha
Helix 10
AB1
A
198 205Right-handed alpha
Helix 11
AB2
A
206 225Right-handed alpha
Helix 12
AB3
A
230 238Right-handed alpha
Helix 13
AB4
A
238 242Right-handed alpha
Helix 14
AB5
A
259 264Right-handed alpha
Helix 15
AB6
A
265 272Right-handed 310
Helix 16
AB7
A
274 287Right-handed alpha
Helix 17
AB8
A
299 311Right-handed alpha
Helix 18
AB9
A
313 320Right-handed 310
Helix 19
AC1
A
344 362Right-handed alpha
Helix 20
AC2
A
369 383Right-handed alpha
Helix 21
AC3
A
396 407Right-handed alpha
Helix 22
AC4
A
411 421Right-handed alpha
Helix 23
AC5
A
453 467Right-handed alpha
Helix 24
AC6
A
475 484Right-handed alpha
Helix 25
AC7
A
487 507Right-handed alpha
Helix 26
AC8
A
512 518Right-handed 310
Helix 27
AC9
A
519 542Right-handed alpha
Helix 28
AD1
A
558 573Right-handed alpha
Helix 29
AD2
A
574 587Right-handed alpha
Helix 30
AD3
A
610 614Right-handed 310
Helix 31
AD4
A
635 638Right-handed 310
Helix 32
AD5
A
642 649Right-handed alpha
Helix 33
AD6
A
664 674Right-handed alpha
Helix 34
AD7
A
678 683Right-handed alpha
Helix 35
AD8
A
685 695Right-handed alpha
Helix 36
AD9
A
713 731Right-handed alpha
Helix 37
AE1
A
733 738Right-handed 310
Helix 38
AE2
A
743 747Right-handed 310
Helix 39
AE3
A
749 761Right-handed alpha
Helix 40
AE4
A
770 780Right-handed alpha
Helix 41
AE5
A
790 794Right-handed 310
Helix 42
AE6
A
802 813Right-handed alpha
Helix 43
AE7
A
813 818Right-handed alpha
Helix 44
AE8
A
870 875Right-handed 310
Helix 45
AE9
A
895 907Right-handed alpha
Helix 46
AF1
A
952 970Right-handed alpha
Helix 47
AF2
A
977 1000Right-handed alpha
Helix 48
AF3
A
1020 1037Right-handed alpha
Helix 49
AF4
A
1050 1054Right-handed 310
Helix 50
AF5
A
1101 1111Right-handed alpha
Helix 51
AF6
A
1131 1133Right-handed 310
Helix 52
AF7
A
1169 1180Right-handed alpha
Helix 53
AF8
A
1191 1196Right-handed alpha
Helix 54
AF9
A
1200 1216Right-handed alpha
Helix 55
AG1
A
1242 1246Right-handed 310
Helix 56
AG2
A
1253 1276Right-handed alpha
Helix 57
AG3
A
1287 1298Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 8Y0B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 598first strand
Strand 2
A
829 833anti-parallel
Strand 3
A
877 886anti-parallel
Strand 4
A
13 23anti-parallel
Strand 5
A
783 789anti-parallel
Strand 6
A
627 633anti-parallel
Strand 7
A
619 624anti-parallel
Strand 8
A
650 661anti-parallel
Strand 9
A
762 769anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 598first strand
Strand 2
A
829 833anti-parallel
Strand 3
A
877 886anti-parallel
Strand 4
A
822 824anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
256 257anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 394first strand
Strand 2
A
450 452anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
849 850first strand
Strand 2
A
860 861anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
935 940first strand
Strand 2
A
925 929anti-parallel
Strand 3
A
912 917anti-parallel
Strand 4
A
1001 1006parallel
Strand 5
A
1074 1077parallel
Strand 6
A
1070 1071anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1114 1118first strand
Strand 2
A
1123 1129anti-parallel
Strand 3
A
1141 1145anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1150 1153first strand
Strand 2
A
1165 1168anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1218 1219first strand
Strand 2
A
1228 1229anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il