Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y0C entry

There are 4 chains in PDB entry 8Y0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 A -19 U 22
C
 C -17 T 9
D
 A -9 T 1
A
 MET 1ASN 1300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 8Y0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 34Right-handed alpha
Helix 2
AA2
A
35 69Right-handed alpha
Helix 3
AA3
A
72 87Right-handed alpha
Helix 4
AA4
A
91 116Right-handed alpha
Helix 5
AA5
A
116 121Right-handed alpha
Helix 6
AA6
A
122 128Right-handed 310
Helix 7
AA7
A
137 148Right-handed alpha
Helix 8
AA8
A
161 172Right-handed alpha
Helix 9
AA9
A
176 178Right-handed 310
Helix 10
AB1
A
179 191Right-handed alpha
Helix 11
AB2
A
198 205Right-handed alpha
Helix 12
AB3
A
206 225Right-handed alpha
Helix 13
AB4
A
230 238Right-handed alpha
Helix 14
AB5
A
239 241Right-handed 310
Helix 15
AB6
A
259 264Right-handed alpha
Helix 16
AB7
A
265 273Right-handed 310
Helix 17
AB8
A
274 287Right-handed alpha
Helix 18
AB9
A
299 311Right-handed alpha
Helix 19
AC1
A
315 320Right-handed 310
Helix 20
AC2
A
345 362Right-handed alpha
Helix 21
AC3
A
369 383Right-handed alpha
Helix 22
AC4
A
396 408Right-handed alpha
Helix 23
AC5
A
410 423Right-handed alpha
Helix 24
AC6
A
453 467Right-handed alpha
Helix 25
AC7
A
474 484Right-handed alpha
Helix 26
AC8
A
485 488Right-handed 310
Helix 27
AC9
A
489 494Right-handed alpha
Helix 28
AD1
A
494 507Right-handed alpha
Helix 29
AD2
A
516 518Right-handed 310
Helix 30
AD3
A
519 541Right-handed alpha
Helix 31
AD4
A
558 574Right-handed alpha
Helix 32
AD5
A
574 587Right-handed alpha
Helix 33
AD6
A
610 614Right-handed 310
Helix 34
AD7
A
642 648Right-handed alpha
Helix 35
AD8
A
664 674Right-handed alpha
Helix 36
AD9
A
678 683Right-handed alpha
Helix 37
AE1
A
685 695Right-handed alpha
Helix 38
AE2
A
713 731Right-handed alpha
Helix 39
AE3
A
733 738Right-handed 310
Helix 40
AE4
A
749 760Right-handed alpha
Helix 41
AE5
A
770 780Right-handed alpha
Helix 42
AE6
A
790 794Right-handed 310
Helix 43
AE7
A
802 810Right-handed alpha
Helix 44
AE8
A
813 818Right-handed alpha
Helix 45
AE9
A
870 874Right-handed 310
Helix 46
AF1
A
895 908Right-handed alpha
Helix 47
AF2
A
952 970Right-handed alpha
Helix 48
AF3
A
977 1000Right-handed alpha
Helix 49
AF4
A
1021 1037Right-handed alpha
Helix 50
AF5
A
1063 1068Right-handed alpha
Helix 51
AF6
A
1101 1109Right-handed alpha
Helix 52
AF7
A
1110 1112Right-handed 310
Helix 53
AF8
A
1169 1179Right-handed alpha
Helix 54
AF9
A
1191 1196Right-handed alpha
Helix 55
AG1
A
1200 1206Right-handed alpha
Helix 56
AG2
A
1206 1216Right-handed alpha
Helix 57
AG3
A
1253 1275Right-handed alpha
Helix 58
AG4
A
1287 1300Right-handed alpha
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There are 9 sheets in PDB entry 8Y0C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 597first strand
Strand 2
A
829 833anti-parallel
Strand 3
A
877 886anti-parallel
Strand 4
A
13 23anti-parallel
Strand 5
A
783 789anti-parallel
Strand 6
A
627 633anti-parallel
Strand 7
A
619 624anti-parallel
Strand 8
A
650 661anti-parallel
Strand 9
A
762 769anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 597first strand
Strand 2
A
829 833anti-parallel
Strand 3
A
877 886anti-parallel
Strand 4
A
822 824anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
256 257anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 394first strand
Strand 2
A
450 452anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
849 850first strand
Strand 2
A
860 861anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
935 940first strand
Strand 2
A
925 929anti-parallel
Strand 3
A
912 917anti-parallel
Strand 4
A
1001 1006parallel
Strand 5
A
1074 1077parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1114 1118first strand
Strand 2
A
1123 1129anti-parallel
Strand 3
A
1141 1145anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1151 1153first strand
Strand 2
A
1165 1167anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1218 1219first strand
Strand 2
A
1228 1229anti-parallel
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