Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y0D entry

There are 3 chains in PDB entry 8Y0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 G 1 U 73
C
 G 9 C 27
A
 ARG 3LYS 1052
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8Y0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 75Right-handed alpha
Helix 2
AA2
A
87 98Right-handed alpha
Helix 3
AA3
A
103 115Right-handed alpha
Helix 4
AA4
A
133 146Right-handed alpha
Helix 5
AA5
A
149 161Right-handed alpha
Helix 6
AA6
A
166 170Right-handed 310
Helix 7
AA7
A
172 188Right-handed alpha
Helix 8
AA8
A
196 207Right-handed alpha
Helix 9
AA9
A
226 231Right-handed alpha
Helix 10
AB1
A
250 264Right-handed alpha
Helix 11
AB2
A
276 287Right-handed alpha
Helix 12
AB3
A
295 303Right-handed alpha
Helix 13
AB4
A
326 334Right-handed alpha
Helix 14
AB5
A
338 343Right-handed alpha
Helix 15
AB6
A
344 358Right-handed alpha
Helix 16
AB7
A
360 370Right-handed alpha
Helix 17
AB8
A
376 384Right-handed alpha
Helix 18
AB9
A
398 400Right-handed 310
Helix 19
AC1
A
404 409Right-handed alpha
Helix 20
AC2
A
413 421Right-handed alpha
Helix 21
AC3
A
438 442Right-handed 310
Helix 22
AC4
A
447 469Right-handed alpha
Helix 23
AC5
A
502 512Right-handed alpha
Helix 24
AC6
A
520 531Right-handed alpha
Helix 25
AC7
A
542 549Right-handed alpha
Helix 26
AC8
A
568 570Right-handed 310
Helix 27
AC9
A
577 584Right-handed alpha
Helix 28
AD1
A
587 594Right-handed alpha
Helix 29
AD2
A
600 613Right-handed alpha
Helix 30
AD3
A
619 627Right-handed alpha
Helix 31
AD4
A
634 645Right-handed alpha
Helix 32
AD5
A
653 667Right-handed alpha
Helix 33
AD6
A
679 688Right-handed alpha
Helix 34
AD7
A
697 700Right-handed 310
Helix 35
AD8
A
701 718Right-handed alpha
Helix 36
AD9
A
746 754Right-handed alpha
Helix 37
AE1
A
760 766Right-handed alpha
Helix 38
AE2
A
814 821Right-handed alpha
Helix 39
AE3
A
823 826Right-handed 310
Helix 40
AE4
A
827 832Right-handed alpha
Helix 41
AE5
A
833 847Right-handed alpha
Helix 42
AE6
A
852 862Right-handed alpha
Helix 43
AE7
A
894 897Right-handed 310
Helix 44
AE8
A
943 954Right-handed alpha
Helix 45
AE9
A
1000 1009Right-handed alpha
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There are 9 sheets in PDB entry 8Y0D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
672 675first strand
Strand 2
A
473 478parallel
Strand 3
A
5 11parallel
Strand 4
A
15 22anti-parallel
Strand 5
A
28 35anti-parallel
Strand 6
A
770 773parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 247first strand
Strand 2
A
392 396anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
553 557first strand
Strand 2
A
572 576anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
790 793first strand
Strand 2
A
799 805anti-parallel
Strand 3
A
880 883anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
891 892first strand
Strand 2
A
905 906anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
911 913first strand
Strand 2
A
928 929anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
922 925first strand
Strand 2
A
915 919anti-parallel
Strand 3
A
961 965anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
934 935first strand
Strand 2
A
940 941anti-parallel
Strand 3
A
1049 1050anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
991 995first strand
Strand 2
A
977 986anti-parallel
Strand 3
A
971 974anti-parallel
Strand 4
A
1027 1032anti-parallel
Strand 5
A
1038 1040anti-parallel
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