Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y0E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y0E entry

There are 9 chains in PDB entry 8Y0E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1LYS 1441
B
ILE 8ALA 1242
C
GLU 2ALA 359
D
MET 1ILE 205
E
GLU 41ASP 147
F
MET 1LYS 334
G
MET 1GLY 105
H
MET 1TYR 80
I
GLU 1011GLN 1249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are156 helices in PDB entry 8Y0E. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
17 25Right-handed alpha
Helix 2
AA2
A
47 51Right-handed 310
Helix 3
AA3
A
87 98Right-handed alpha
Helix 4
AA4
A
108 113Right-handed 310
Helix 5
AA5
A
116 127Right-handed alpha
Helix 6
AA6
A
166 176Right-handed alpha
Helix 7
AA7
A
178 185Right-handed alpha
Helix 8
AA8
A
188 195Right-handed 310
Helix 9
AA9
A
205 209Right-handed 310
Helix 10
AB1
A
226 240Right-handed alpha
Helix 11
AB2
A
253 273Right-handed alpha
Helix 12
AB3
A
299 303Right-handed 310
Helix 13
AB4
A
308 314Right-handed alpha
Helix 14
AB5
A
342 348Right-handed alpha
Helix 15
AB6
A
358 369Right-handed alpha
Helix 16
AB7
A
389 393Right-handed 310
Helix 17
AB8
A
424 426Right-handed 310
Helix 18
AB9
A
450 455Right-handed alpha
Helix 19
AC1
A
470 480Right-handed alpha
Helix 20
AC2
A
484 488Right-handed 310
Helix 21
AC3
A
501 512Right-handed alpha
Helix 22
AC4
A
523 531Right-handed alpha
Helix 23
AC5
A
552 561Right-handed alpha
Helix 24
AC6
A
604 609Right-handed alpha
Helix 25
AC7
A
615 625Right-handed alpha
Helix 26
AC8
A
625 648Right-handed alpha
Helix 27
AC9
A
652 657Right-handed 310
Helix 28
AD1
A
659 686Right-handed alpha
Helix 29
AD2
A
696 709Right-handed alpha
Helix 30
AD3
A
712 714Right-handed 310
Helix 31
AD4
A
715 722Right-handed alpha
Helix 32
AD5
A
728 736Right-handed alpha
Helix 33
AD6
A
741 750Right-handed alpha
Helix 34
AD7
A
781 785Right-handed 310
Helix 35
AD8
A
797 834Right-handed alpha
Helix 36
AD9
A
876 885Right-handed alpha
Helix 37
AE1
A
891 918Right-handed alpha
Helix 38
AE2
A
933 945Right-handed alpha
Helix 39
AE3
A
953 970Right-handed alpha
Helix 40
AE4
A
971 976Right-handed 310
Helix 41
AE5
A
978 983Right-handed alpha
Helix 42
AE6
A
988 995Right-handed alpha
Helix 43
AE7
A
995 1006Right-handed alpha
Helix 44
AE8
A
1007 1011Right-handed 310
Helix 45
AE9
A
1015 1032Right-handed alpha
Helix 46
AF1
A
1040 1059Right-handed alpha
Helix 47
AF2
A
1074 1082Right-handed alpha
Helix 48
AF3
A
1106 1118Right-handed alpha
Helix 49
AF4
A
1145 1150Right-handed 310
Helix 50
AF5
A
1151 1162Right-handed alpha
Helix 51
AF6
A
1181 1188Right-handed alpha
Helix 52
AF7
A
1191 1203Right-handed alpha
Helix 53
AF8
A
1230 1232Right-handed 310
Helix 54
AF9
A
1242 1257Right-handed alpha
Helix 55
AG1
A
1299 1306Right-handed alpha
Helix 56
AG2
A
1318 1326Right-handed alpha
Helix 57
AG3
A
1327 1344Right-handed alpha
Helix 58
AG4
A
1349 1361Right-handed alpha
Helix 59
AG5
A
1362 1364Right-handed 310
Helix 60
AG6
A
1370 1378Right-handed alpha
Helix 61
AG7
A
1381 1389Right-handed alpha
Helix 62
AG8
A
1390 1402Right-handed alpha
Helix 63
AG9
A
1410 1416Right-handed alpha
Helix 64
AH1
A
1422 1426Right-handed 310
Helix 65
AH2
A
1432 1440Right-handed alpha
Helix 66
AH3
B
12 16Right-handed 310
Helix 67
AH4
B
22 38Right-handed alpha
Helix 68
AH5
B
40 61Right-handed alpha
Helix 69
AH6
B
76 81Right-handed alpha
Helix 70
AH7
B
113 121Right-handed alpha
Helix 71
AH8
B
175 182Right-handed alpha
Helix 72
AH9
B
272 278Right-handed alpha
Helix 73
AI1
B
283 293Right-handed alpha
Helix 74
AI2
B
300 315Right-handed alpha
Helix 75
AI3
B
328 341Right-handed alpha
Helix 76
AI4
B
349 352Right-handed 310
Helix 77
AI5
B
353 372Right-handed alpha
Helix 78
AI6
B
373 377Right-handed 310
Helix 79
AI7
B
379 381Right-handed 310
Helix 80
AI8
B
382 402Right-handed alpha
Helix 81
AI9
B
421 452Right-handed alpha
Helix 82
AJ1
B
453 457Right-handed 310
Helix 83
AJ2
B
458 470Right-handed alpha
Helix 84
AJ3
B
478 489Right-handed alpha
Helix 85
AJ4
B
513 522Right-handed alpha
Helix 86
AJ5
B
538 542Right-handed alpha
Helix 87
AJ6
B
561 565Right-handed 310
Helix 88
AJ7
B
582 592Right-handed alpha
Helix 89
AJ8
B
603 611Right-handed alpha
Helix 90
AJ9
B
627 642Right-handed alpha
Helix 91
AK1
B
679 696Right-handed alpha
Helix 92
AK2
B
698 705Right-handed 310
Helix 93
AK3
B
715 725Right-handed alpha
Helix 94
AK4
B
728 735Right-handed alpha
Helix 95
AK5
B
742 747Right-handed alpha
Helix 96
AK6
B
754 761Right-handed alpha
Helix 97
AK7
B
774 779Right-handed 310
Helix 98
AK8
B
780 785Right-handed alpha
Helix 99
AK9
B
788 792Right-handed 310
Helix 100
AL1
B
793 805Right-handed alpha
Helix 101
AL2
B
836 841Right-handed 310
Helix 102
AL3
B
869 874Right-handed alpha
Helix 103
AL4
B
916 920Right-handed 310
Helix 104
AL5
B
1031 1037Right-handed alpha
Helix 105
AL6
B
1038 1055Right-handed alpha
Helix 106
AL7
B
1067 1078Right-handed alpha
Helix 107
AL8
B
1114 1119Right-handed alpha
Helix 108
AL9
B
1148 1158Right-handed alpha
Helix 109
AM1
B
1162 1169Right-handed alpha
Helix 110
AM2
B
1201 1205Right-handed 310
Helix 111
AM3
B
1214 1226Right-handed alpha
Helix 112
AM4
C
19 30Right-handed alpha
Helix 113
AM5
C
51 64Right-handed alpha
Helix 114
AM6
C
89 99Right-handed alpha
Helix 115
AM7
C
173 177Right-handed 310
Helix 116
AM8
C
230 259Right-handed alpha
Helix 117
AM9
C
287 302Right-handed alpha
Helix 118
AN1
C
328 359Right-handed alpha
Helix 119
AN2
D
2 17Right-handed alpha
Helix 120
AN3
D
27 39Right-handed alpha
Helix 121
AN4
D
67 80Right-handed alpha
Helix 122
AN5
D
94 98Right-handed 310
Helix 123
AN6
D
99 113Right-handed alpha
Helix 124
AN7
D
122 126Right-handed 310
Helix 125
AN8
D
129 133Right-handed 310
Helix 126
AN9
D
143 155Right-handed alpha
Helix 127
AO1
D
157 161Right-handed 310
Helix 128
AO2
D
168 175Right-handed alpha
Helix 129
AO3
E
72 90Right-handed alpha
Helix 130
AO4
E
101 112Right-handed alpha
Helix 131
AO5
F
15 20Right-handed alpha
Helix 132
AO6
F
22 36Right-handed alpha
Helix 133
AO7
F
175 195Right-handed alpha
Helix 134
AO8
F
196 207Right-handed alpha
Helix 135
AO9
F
290 314Right-handed alpha
Helix 136
AP1
F
317 323Right-handed alpha
Helix 137
AP2
F
324 332Right-handed alpha
Helix 138
AP3
G
33 36Right-handed 310
Helix 139
AP4
G
53 60Right-handed alpha
Helix 140
AP5
G
61 63Right-handed 310
Helix 141
AP6
H
14 33Right-handed alpha
Helix 142
AP7
H
51 57Right-handed alpha
Helix 143
AP8
H
63 73Right-handed alpha
Helix 144
AP9
H
75 79Right-handed 310
Helix 145
AQ1
I
1016 1027Right-handed alpha
Helix 146
AQ2
I
1030 1035Right-handed alpha
Helix 147
AQ3
I
1044 1051Right-handed alpha
Helix 148
AQ4
I
1063 1085Right-handed alpha
Helix 149
AQ5
I
1086 1089Right-handed 310
Helix 150
AQ6
I
1093 1101Right-handed alpha
Helix 151
AQ7
I
1104 1115Right-handed alpha
Helix 152
AQ8
I
1121 1133Right-handed alpha
Helix 153
AQ9
I
1133 1154Right-handed alpha
Helix 154
AR1
I
1158 1183Right-handed alpha
Helix 155
AR2
I
1209 1214Right-handed alpha
Helix 156
AR3
I
1242 1247Right-handed 310
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There are 44 sheets in PDB entry 8Y0E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
4 5first strand
Strand 2
B
1208 1213parallel
Strand 3
B
1174 1179anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1404 1406first strand
Strand 2
A
10 15anti-parallel
Strand 3
B
1228 1232anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
27 28first strand
Strand 2
A
74 83parallel
Strand 3
A
197 203anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
35 36first strand
Strand 2
A
39 40anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
143 146first strand
Strand 2
A
154 158anti-parallel
Strand 3
A
161 165anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
317 318first strand
Strand 2
B
1146 1147anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1120 1121first strand
Strand 2
A
323 329anti-parallel
Strand 3
A
462 466anti-parallel
Strand 4
A
414 418anti-parallel
Strand 5
A
428 436anti-parallel
Strand 6
A
337 341parallel
Strand 7
A
444 446anti-parallel
Strand 8
A
323 329parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
349 353first strand
Strand 2
A
404 408anti-parallel
Strand 3
A
376 381anti-parallel
Strand 4
A
386 388anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
514 515first strand
Strand 2
A
518 519anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
521 522first strand
Strand 2
A
550 551anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
567 569first strand
Strand 2
A
591 594anti-parallel
Strand 3
A
597 600anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
753 754first strand
Strand 2
A
787 788anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
836 838first strand
Strand 2
A
844 846anti-parallel
Strand 3
A
849 852anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
866 869first strand
Strand 2
A
927 930anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1267 1272first strand
Strand 2
A
1291 1296anti-parallel
Strand 3
A
1093 1098anti-parallel
Strand 4
A
1309 1316anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1120 1121first strand
Strand 2
A
1258 1260anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1206 1210first strand
Strand 2
A
1221 1228anti-parallel
Strand 3
A
1171 1180anti-parallel
Strand 4
A
1126 1132anti-parallel
Strand 5
G
38 43anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1275 1278first strand
Strand 2
A
1284 1287anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1428 1431first strand
Strand 2
E
117 122anti-parallel
Strand 3
E
130 135anti-parallel
Strand 4
E
55 59parallel
Strand 5
B
1238 1239parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
145 151first strand
Strand 2
B
125 140anti-parallel
Strand 3
B
155 161anti-parallel
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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
145 151first strand
Strand 2
B
125 140anti-parallel
Strand 3
B
82 96anti-parallel
Strand 4
B
67 69anti-parallel
Strand 5
I
1198 1199anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
100 101first strand
Strand 2
B
110 111anti-parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
193 195first strand
Strand 2
B
198 202anti-parallel
Strand 3
B
506 508anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
416 420first strand
Strand 2
B
204 208anti-parallel
Strand 3
B
523 525parallel
Strand 4
B
568 570anti-parallel
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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
213 216first strand
Strand 2
B
226 234anti-parallel
Strand 3
B
244 251anti-parallel
Strand 4
B
256 261anti-parallel
Strand 5
B
269 271anti-parallel
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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
596 597first strand
Strand 2
B
620 625anti-parallel
Strand 3
B
613 617anti-parallel
Strand 4
B
659 663parallel
Strand 5
B
650 654anti-parallel
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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
710 712first strand
Strand 2
B
671 678anti-parallel
Strand 3
B
738 741anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
710 712first strand
Strand 2
B
671 678anti-parallel
Strand 3
B
771 772anti-parallel
Strand 4
B
751 752parallel
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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
823 826first strand
Strand 2
B
879 885anti-parallel
Strand 3
B
982 988anti-parallel
Strand 4
B
963 965anti-parallel
Strand 5
B
925 927anti-parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
834 835first strand
Strand 2
B
1058 1059parallel
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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1085 1086first strand
Strand 2
B
1101 1110anti-parallel
Strand 3
B
995 998anti-parallel
Strand 4
B
1003 1010anti-parallel
Strand 5
B
864 868parallel
Strand 6
B
1026 1028anti-parallel
Strand 7
B
847 853parallel
Strand 8
B
1101 1110anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
895 896first strand
Strand 2
B
936 937anti-parallel
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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
932 933first strand
Strand 2
B
955 956anti-parallel
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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1017 1018first strand
Strand 2
B
1088 1089anti-parallel
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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1188 1190first strand
Strand 2
B
1195 1197anti-parallel
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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
8 12first strand
Strand 2
C
38 48anti-parallel
Strand 3
C
216 227anti-parallel
Strand 4
C
180 186anti-parallel
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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
67 73first strand
Strand 2
C
157 169anti-parallel
Strand 3
C
110 116anti-parallel
Strand 4
C
130 132anti-parallel
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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
123 126first strand
Strand 2
C
148 152anti-parallel
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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
267 271first strand
Strand 2
C
277 284anti-parallel
Strand 3
C
318 325anti-parallel
Strand 4
C
307 313anti-parallel
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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
20 21first strand
Strand 2
D
40 46anti-parallel
Strand 3
D
52 58anti-parallel
Strand 4
D
87 91parallel
Strand 5
D
117 121parallel
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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
138 142first strand
Strand 2
D
181 186anti-parallel
Strand 3
D
194 201anti-parallel
Strand 4
D
162 165parallel
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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
2 10first strand
Strand 2
F
71 79anti-parallel
Strand 3
F
47 54anti-parallel
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There are 6 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
86 91first strand
Strand 2
F
101 103anti-parallel
Strand 3
F
110 113anti-parallel
Strand 4
F
148 153parallel
Strand 5
F
129 140anti-parallel
Strand 6
F
86 91anti-parallel
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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
68 69first strand
Strand 2
G
81 86anti-parallel
Strand 3
G
91 95anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il